Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02353 ATGGCTGAAAATGCCTCCCAGGAGGGAAGATCTCTGGCTCTGACGCCTACTTGGTCTGTTGCTTCCGTGTTGACCATTTTCGTCGCAGTTTCATTGCTTGTAGAACGCTCCATTCATAGGCTAAGCTCTTGGCTGGGAAAAACTCATAGAAAACCCTTATTTGAGGCAGTGGAGAAAATGAAAGAAGAGTTAATGCTGCTTGGTTTTATTTCTTTGCTTCTGACGGCAACATCAAGTCTAATATCAAATATCTGCATTCCATCCAAGTTTTATGATACATCTTTTATTCCGTGCTCTCAGTCGGAGATTGATGAACAAAATGCGGATAATTCTTCATCTGAGAAGCGAAAGCTATTTATGGTTTCTGTTTTCCCACATTTGAATAGGAGGATGCTAACTGTGAACAAAAATACATGCAAAGAGGGTCATGAGCCCTTTGTTTCCTATGAGGGACTTGAGCAATTGCATCGCTTTATCTTTGTGATGGCAGTTACTCATATTTCTTATAGTTGCTTAACCATGTTGTTGGCAATTGTGAAGATCCACAGTTGGAGAGAATGGGAAAATGAAGCTCACATGGACCACCATGATTTATTCAACGATACAACGAAAAAAAAGATAATGCAGAGACAATCTACCTTTGTACAATATCACACCTCCAATCCTTTAACCAGGAATAGCTTTCTTATCTGGATGACCTGTTTCTTTAGGCAATTTGGGCGTTCTGTTGTTCGTTCTGACTACCTTACACTTCGCAAAGGCTTCATCACGAATCACAACCTCTCGTCAAAATATGATTTCCATAGCTACATGGTTCGTTCTATGGAAGAAGAATTCCAGAGAATAGTTGGTGTGAGTGGTCCGTTATGGGGATTTGTCGTAGCTTTTTTGCTGTTTAATGTGAAAGGCTCCAACCTTTACTTTTGGATAGCAACTATTCCTGTTACTCTTGTTCTTTTAGTGGGCACAAAGTTACAGCATGTTATTGCAACTTTGACGTTGGAGAATGCTGGTATAACCGGATTCTTTTCTGGAGCAAAGCTGAGGCCCCGTGATGATCTTTTCTGGTTTAAGAAGCCTGAACTTCTGTTGTCCTTGATCCATTTTGTTCTTTTCCAGAATGCTTTCGAATTGGCTTCGTTCTTCTGGTTCTGGTGGCAATTTGGATATAGTTCTTGCTTCATTAGCAATCATCTGCTTGTCTATGTAAGACTAATCTTGGGTTTTGCTGGACAATTTCTTTGCAGCTATAGCACCTTGCCCCTATACGCACTGGTTACTCAGATGGGAACAAACTACAAGGCTGCCTTAATTCCTCAAAGAATAAGGGAAACAATCCATGGGTGGGGTAAGTCAGCTAGAAGGAAGAGAAGGCTCCGGATATTTACTGATGATGCCACAATCCACACGGAAACAAGCACCGTGATGTCACTTGAGGACGATGACAACCAACATGTTGATACACCTAAAGCTGCAACTGGCTATGCCATAATTGAGATGCAGCCACCTACTGCAGCAAATGTGTCCGCCTCTGTTACTAATGATGCATCACGTGCGGTTAGAACTCCCCTTCTTCAGCCCTCTCTGTCTCTTTCATTGCCTGTGGCTCAAAACTTCATTGACGGAGCCCCTTTAAGAAGCTCATCAATGCCGGCTCAAAACTTCGATGCCGAAAACTCTTTAAGAAGCTCATCTATGCCGAGATAA 1707 42.06 MAENASQEGRSLALTPTWSVASVLTIFVAVSLLVERSIHRLSSWLGKTHRKPLFEAVEKMKEELMLLGFISLLLTATSSLISNICIPSKFYDTSFIPCSQSEIDEQNADNSSSEKRKLFMVSVFPHLNRRMLTVNKNTCKEGHEPFVSYEGLEQLHRFIFVMAVTHISYSCLTMLLAIVKIHSWREWENEAHMDHHDLFNDTTKKKIMQRQSTFVQYHTSNPLTRNSFLIWMTCFFRQFGRSVVRSDYLTLRKGFITNHNLSSKYDFHSYMVRSMEEEFQRIVGVSGPLWGFVVAFLLFNVKGSNLYFWIATIPVTLVLLVGTKLQHVIATLTLENAGITGFFSGAKLRPRDDLFWFKKPELLLSLIHFVLFQNAFELASFFWFWWQFGYSSCFISNHLLVYVRLILGFAGQFLCSYSTLPLYALVTQMGTNYKAALIPQRIRETIHGWGKSARRKRRLRIFTDDATIHTETSTVMSLEDDDNQHVDTPKAATGYAIIEMQPPTAANVSASVTNDASRAVRTPLLQPSLSLSLPVAQNFIDGAPLRSSSMPAQNFDAENSLRSSSMPR* 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23944644 23954167 - CsaV3_4G033790.1 Csa04g02353 527963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02353 568 PANTHER MLO-LIKE PROTEIN 11 4 490 - -
Csa04g02353 568 PANTHER MLO-LIKE PROTEIN 1 4 490 IPR004326 GO:0006952|GO:0016021
Csa04g02353 568 Pfam Mlo family 10 466 IPR004326 GO:0006952|GO:0016021
Csa04g02353 568 MobiDBLite consensus disorder prediction 545 568 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02353 K08472 MLO; mlo protein - csv:101207170 1132.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01923 Csa-Chr3:15003227 Csa04g02353 Csa-Chr4:23944644 1.92E-162 dispersed
Csa04g02353 Csa-Chr4:23944644 Csa05g02923 Csa-Chr5:29673306 0 dispersed
Csa04g02353 Csa-Chr4:23944644 Csa06g01679 Csa-Chr6:14713131 2.33E-121 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g246 Blo03g00649 Blo03g01542 Bda07g00291 . . Bpe08g01029 . . . . Cma01g01204 Cma09g00875 Car01g01028 Car09g00788 Sed04g1597 Cpe06g00699 . Bhi09g03403 Tan01g0784 Cmetu04g0308 . . . . Cla11g01772 Cam11g1837 Cec11g1858 Cco11g1866 Clacu11g1998 Cmu11g1807 Cre11g2216 Cone6ag0137 Cone9ag0162 . . Lsi04g01324 Csa04g02353 Chy07g00085 . . . . . Bpe11g00487 . Bma07g01182 . . Cmo01g01256 Cmo09g00864 Cma04g00535 . Car04g00505 . . . . . . . . . . Cla05g01024 Cam05g1118 Cec05g1128 Cco05g1118 Clacu05g1109 Cmu05g1058 Cre05g1133 . . Chy06g01139 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02923 . 3 531 MLO family AT5G53760 71.6 4.7e-218 754.2
Csa04g02353 . 5 552 MLO family AT5G53760 69.2 1.3e-215 746.1
Csa01g01298 CCT,ECH 10 467 MLO family AT3G45290 55.2 9.5e-138 487.3
Csa05g02923 . 3 531 MLO family AT1G26700 70.1 2.1e-210 728.8
Csa04g02353 . 1 532 MLO family AT1G26700 67.9 9.5e-208 719.9
Csa01g01295 . 8 510 MLO family AT2G39200 65.8 1.3e-191 666.4
Csa05g02821 . 7 533 MLO family AT2G39200 64.1 1.7e-191 666.0
Csa06g01679 CCT,ECH 8 504 MLO family AT2G39200 66.7 1.0e-188 656.8
Csa06g01679 CCT,ECH 8 415 MLO family AT1G61560 66.9 1.9e-160 562.4
Csa01g01295 . 1 416 MLO family AT1G61560 67.2 4.0e-158 554.7
Csa05g02821 . 7 408 MLO family AT1G61560 65.7 2.9e-153 538.5
Csa06g03404 . 28 420 MLO family AT1G61560 52.5 2.0e-117 419.5
Csa03g00015 . 27 418 MLO family AT1G61560 51.2 3.3e-112 402.1
Csa06g03404 . 11 488 MLO family AT2G17430 62.7 1.7e-172 602.8
Csa03g00015 . 6 484 MLO family AT2G17430 61.0 2.5e-160 562.4
Csa06g01952 . 2 479 MLO family AT2G17430 58.0 6.1e-151 531.2
Csa06g03404 . 28 558 MLO family AT2G17480 63.6 3.4e-195 678.3
Csa03g00015 . 5 566 MLO family AT2G17480 57.9 2.3e-175 612.5
Csa06g01952 . 12 464 MLO family AT2G17480 59.7 4.8e-149 525.0
Csa06g01679 CCT,ECH 8 462 MLO family AT2G17480 51.2 1.3e-125 447.2
Csa06g01952 . 9 380 MLO family AT1G42560 60.1 1.0e-123 440.3
Csa06g03404 . 28 384 MLO family AT1G42560 58.4 5.1e-120 427.9
Csa03g00015 . 27 383 MLO family AT1G42560 55.5 2.7e-113 405.6
Csa01g01295 . 6 381 MLO family AT1G42560 50.1 4.4e-95 345.1
Csa06g00633 . 6 419 MLO family AT4G24250 53.5 1.8e-115 412.9
Csa02g01639 . 17 434 MLO family AT4G24250 51.1 1.9e-109 392.9
Csa06g03404 . 9 385 MLO family AT5G65970 65.8 1.4e-143 506.5
Csa03g00015 . 6 383 MLO family AT5G65970 65.2 6.0e-142 501.1
Csa06g01952 . 5 380 MLO family AT5G65970 57.3 1.8e-117 419.9
Csa06g01679 CCT,ECH 2 380 MLO family AT5G65970 51.2 7.0e-106 381.3
Csa01g01295 . 2 381 MLO family AT5G65970 50.8 1.6e-102 370.2
Csa06g01952 . 2 472 MLO family AT2G33670 63.8 1.2e-169 593.2
Csa06g03404 . 28 490 MLO family AT2G33670 60.0 3.4e-156 548.5
Csa03g00015 . 18 466 MLO family AT2G33670 57.6 1.2e-140 496.9
Csa05g02821 . 64 540 MLO family AT1G11310 62.7 3.1e-168 588.6
Csa01g01295 . 63 506 MLO family AT1G11310 65.3 3.5e-164 575.1
Csa06g01679 CCT,ECH 63 519 MLO family AT1G11310 63.2 1.9e-162 569.3
Csa06g00633 . 5 509 MLO family AT2G44110 58.4 3.3e-167 585.1
Csa06g00633 . 1 485 MLO family AT4G02600 75.3 8.7e-211 729.9
Csa03g01923 . 3 557 MLO family AT1G11000 66.0 5.6e-211 730.7
Csa03g00073 . 1 480 MLO family AT1G11000 52.1 4.4e-131 465.3
Csa06g00633 . 1 485 MLO family AT4G02600 75.3 8.7e-211 729.9
Csa05g02821 . 64 540 MLO family AT1G11310 62.7 3.1e-168 588.6
Csa01g01295 . 63 506 MLO family AT1G11310 65.3 3.5e-164 575.1
Csa06g01679 CCT,ECH 63 519 MLO family AT1G11310 63.2 1.9e-162 569.3
Csa01g01298 CCT,ECH 10 467 MLO family AT3G45290 55.2 9.5e-138 487.3
Csa03g01923 . 3 557 MLO family AT1G11000 66.0 5.6e-211 730.7
Csa03g00073 . 1 480 MLO family AT1G11000 52.1 4.4e-131 465.3
Csa06g01952 . 2 472 MLO family AT2G33670 63.8 1.2e-169 593.2
Csa06g03404 . 28 490 MLO family AT2G33670 60.0 3.4e-156 548.5
Csa03g00015 . 18 466 MLO family AT2G33670 57.6 1.2e-140 496.9
Csa06g01679 CCT,ECH 8 415 MLO family AT1G61560 66.9 1.9e-160 562.4
Csa01g01295 . 1 416 MLO family AT1G61560 67.2 4.0e-158 554.7
Csa05g02821 . 7 408 MLO family AT1G61560 65.7 2.9e-153 538.5
Csa06g03404 . 28 420 MLO family AT1G61560 52.5 2.0e-117 419.5
Csa03g00015 . 27 418 MLO family AT1G61560 51.2 3.3e-112 402.1
Csa06g03404 . 11 488 MLO family AT2G17430 62.7 1.7e-172 602.8
Csa03g00015 . 6 484 MLO family AT2G17430 61.0 2.5e-160 562.4
Csa06g01952 . 2 479 MLO family AT2G17430 58.0 6.1e-151 531.2
Csa06g03404 . 28 558 MLO family AT2G17480 63.6 3.4e-195 678.3
Csa03g00015 . 5 566 MLO family AT2G17480 57.9 2.3e-175 612.5
Csa06g01952 . 12 464 MLO family AT2G17480 59.7 4.8e-149 525.0
Csa06g01679 CCT,ECH 8 462 MLO family AT2G17480 51.2 1.3e-125 447.2
Csa06g01952 . 9 380 MLO family AT1G42560 60.1 1.0e-123 440.3
Csa06g03404 . 28 384 MLO family AT1G42560 58.4 5.1e-120 427.9
Csa03g00015 . 27 383 MLO family AT1G42560 55.5 2.7e-113 405.6
Csa01g01295 . 6 381 MLO family AT1G42560 50.1 4.4e-95 345.1
Csa06g03404 . 9 385 MLO family AT5G65970 65.8 1.4e-143 506.5
Csa03g00015 . 6 383 MLO family AT5G65970 65.2 6.0e-142 501.1
Csa06g01952 . 5 380 MLO family AT5G65970 57.3 1.8e-117 419.9
Csa06g01679 CCT,ECH 2 380 MLO family AT5G65970 51.2 7.0e-106 381.3
Csa01g01295 . 2 381 MLO family AT5G65970 50.8 1.6e-102 370.2
Csa05g02923 . 3 531 MLO family AT5G53760 71.6 4.7e-218 754.2
Csa04g02353 . 5 552 MLO family AT5G53760 69.2 1.3e-215 746.1
Csa01g01295 . 8 510 MLO family AT2G39200 65.8 1.3e-191 666.4
Csa05g02821 . 7 533 MLO family AT2G39200 64.1 1.7e-191 666.0
Csa06g01679 CCT,ECH 8 504 MLO family AT2G39200 66.7 1.0e-188 656.8
Csa06g00633 . 6 419 MLO family AT4G24250 53.5 1.8e-115 412.9
Csa02g01639 . 17 434 MLO family AT4G24250 51.1 1.9e-109 392.9
Csa05g02923 . 3 531 MLO family AT1G26700 70.1 2.1e-210 728.8
Csa04g02353 . 1 532 MLO family AT1G26700 67.9 9.5e-208 719.9
Csa06g00633 . 5 509 MLO family AT2G44110 58.4 3.3e-167 585.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001851 1 6 2 2 2 1 3 2 1 2 2 2 3 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 4 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02353 Csa_Chr04 FPKM 15.679117 13.522655 11.681643 13.458448 9.307278 7.190563 8.090017 15.121652 14.835023 16.243299