Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02357 ATGGCAAAATGGCTTCATTCAACTACATTTGTGGATTTGCCTTCACATTTGATCTTAGAAGTTCTAACGTCTGGTCGGTTGAATGCTCATGATCTTGTTTGCTTGGAGTTGACTTGCAAGTTGTTTGGAGGGAGCCATGAGCTGTACCCTCTCAAGTTTCGATCGTTAGTTGATTTTGCAGCATTTCAATTATGTATATCACACAGCACTTATTCTGGAATGGGAGAGGATTCCCAAAGACAACTCTTTGATCGCTGTCAAGGGAAGTGGAAACGGGTTTTTCGGTTCTTGCAATTGGTGGAGAAATCTTCCAACATCGTTGAGACCTCAGAAGGCAATATGCAGATTGCAACTGGAAGATATCATACGCTTCTTATCAGCAATGGATCAGTATACTCTTGTGGTTCCAGCTTATGTGGTGTTCTTGGACATGGCTCTGAGACTACGCAATGTGTAACATTTACCAGAATTAATTTTCCACCTTCTATATATGTTGAGCAAGTTTCTGCTTCTCACAATCATGCTGCATTTGTCACACAGTCAGGACAGGTTTTCACCTGCGGGGATAATTCATCATTTTGTTGTGGCCATAGAGATACAAGTTGTCGAATCTTTAGACCCAGACTTGTTGAAGCATTAAACGGAATCCCTTGCAAGCAGGTCTCTGTGGGGCATAACTTTTCAGTGTTTTTAACAAGACAAGGCCACGTCTATACATGTGGAACAAACACTTATGGTCAGCTTGGCCACGGCAATACTCTAGAGGGACCTACTCCAAAGATTGTTCAACGGCTTGTAGAAATTGGATCTGTAATTCAGATTGCAGCTGGTCCGAGCTACGTATTGGCCGTAGTTAATGATGGAAGAGTATACTCTTTTGGGTCAGGATCTAACTTTTGCCTTGGCCACGGAGAGCAGCACAACGAGTTCCAACCTCGTGTCCTACAGACATTTCGATTGAAGAATATTCATGTTGTTTCTGTATCTGCTGGTGACGAGCATGCCGTTGCATTAGATTCCAATGGACTTGTATACACTTGGGGAAAAGGCTACTGTGGTGCTCTGGGCCATGGAGATGAGATTGATAAGACTATTCCTCAACCTCTGAACAGCCTTAAGAACCACCTTGCAGTGCAGGTATGTGCAAGAAAGAGAAAAACTTTTGTGCTGGTGGACACCGGTATTGTTTATGGTTTTGGGTGGATGGGGTTTGGTAGCCTTGGATTTCCAGACAGAGGAGTATCTGACAAAGTCTTGAGACCTCGAAGCCTCGACAGCTTAAGAGTTCACCGTGTTTCTCAAATCAGCACCGGGCTATATCACACTGTTGTGGTTACCGAGAAAGGAAAAATATTCGGCTTTGGAGACAATGAACGTGCACAACTGGGACATGAATCTCTGAGAGGATGCCTCGAACCCACTGAAATCTTTATCCATGATTTGGATGATGAGAGTATTGTTTCAGAATCTGGGTAG 1476 43.56 MAKWLHSTTFVDLPSHLILEVLTSGRLNAHDLVCLELTCKLFGGSHELYPLKFRSLVDFAAFQLCISHSTYSGMGEDSQRQLFDRCQGKWKRVFRFLQLVEKSSNIVETSEGNMQIATGRYHTLLISNGSVYSCGSSLCGVLGHGSETTQCVTFTRINFPPSIYVEQVSASHNHAAFVTQSGQVFTCGDNSSFCCGHRDTSCRIFRPRLVEALNGIPCKQVSVGHNFSVFLTRQGHVYTCGTNTYGQLGHGNTLEGPTPKIVQRLVEIGSVIQIAAGPSYVLAVVNDGRVYSFGSGSNFCLGHGEQHNEFQPRVLQTFRLKNIHVVSVSAGDEHAVALDSNGLVYTWGKGYCGALGHGDEIDKTIPQPLNSLKNHLAVQVCARKRKTFVLVDTGIVYGFGWMGFGSLGFPDRGVSDKVLRPRSLDSLRVHRVSQISTGLYHTVVVTEKGKIFGFGDNERAQLGHESLRGCLEPTEIFIHDLDDESIVSESG* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23961775 23967588 + CsaV3_4G033830.1 Csa04g02357 527967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02357 491 Pfam Regulator of chromosome condensation (RCC1) repeat 128 178 IPR000408 -
Csa04g02357 491 Pfam Regulator of chromosome condensation (RCC1) repeat 341 382 IPR000408 -
Csa04g02357 491 Pfam Regulator of chromosome condensation (RCC1) repeat 181 231 IPR000408 -
Csa04g02357 491 Pfam Regulator of chromosome condensation (RCC1) repeat 287 338 IPR000408 -
Csa04g02357 491 Pfam Regulator of chromosome condensation (RCC1) repeat 235 284 IPR000408 -
Csa04g02357 491 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 342 393 IPR000408 -
Csa04g02357 491 Pfam Regulator of chromosome condensation (RCC1) repeat 432 460 - -
Csa04g02357 491 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 287 IPR000408 -
Csa04g02357 491 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 234 IPR000408 -
Csa04g02357 491 PANTHER BNAA01G28890D PROTEIN 9 479 - -
Csa04g02357 491 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 435 445 IPR000408 -
Csa04g02357 491 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 328 338 IPR000408 -
Csa04g02357 491 Gene3D - 61 268 IPR009091 -
Csa04g02357 491 SUPERFAMILY RCC1/BLIP-II 109 412 IPR009091 -
Csa04g02357 491 Gene3D - 269 490 IPR009091 -
Csa04g02357 491 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 394 448 IPR000408 -
Csa04g02357 491 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 479 - -
Csa04g02357 491 PRINTS Chromosome condensation regulator RCC1 signature 289 305 IPR000408 -
Csa04g02357 491 PRINTS Chromosome condensation regulator RCC1 signature 325 338 IPR000408 -
Csa04g02357 491 PRINTS Chromosome condensation regulator RCC1 signature 344 360 IPR000408 -
Csa04g02357 491 PRINTS Chromosome condensation regulator RCC1 signature 435 451 IPR000408 -
Csa04g02357 491 PRINTS Chromosome condensation regulator RCC1 signature 451 465 IPR000408 -
Csa04g02357 491 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 181 IPR000408 -
Csa04g02357 491 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 288 341 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02357 - - - csv:101207584 1010.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02357 Csa-Chr4:23961775 Csa05g02252 Csa-Chr5:25177447 2.36E-15 dispersed
Csa04g02357 Csa-Chr4:23961775 Csa06g02519 Csa-Chr6:22412182 9.93E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g253 . Blo03g01540 . Bda09g00499 . . . . . . Cma01g01201 Cma09g00877 Car01g01026 Car09g00789 Sed04g3120 Cpe06g00700 Cpe02g00708 Bhi09g03400 Tan01g4411 Cmetu07g0621 . Hepe01g1375 Mch11g1083 . Cla11g01774 Cam11g1838 Cec11g1859 Cco11g1869 Clacu11g2000 Cmu11g1809 Cre11g2217 . . . . Lsi04g01323 Csa04g02357 Chy07g00086 . . . . . . . Bma07g01184 . . Cmo01g01255 Cmo09g00866 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004199 2 2 1 3 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02357 Csa_Chr04 FPKM 7.972639 8.495915 2.757176 2.768084 22.953106 23.244019 23.527637 1.712106 2.16246 2.011519