Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02360 ATGGCCGAGCGTTTCTTCCCAAACCAAATGCCACGCTTCCCTGCCGAAGCACCGCCGGACGAACTAGCATCATCCCATTCCTATTCCGCCACTCTCATTCCCACAGAGCTCCTTTCACTTCCCGATGCCGCACTTTCTGATCGCCTTAGACAGGCAGCTCTCAACCTCAAAGAAACGGTCGTGAGAGAGACGTGGACGTTGAGTGGAAGGCATCCGCAGGATAATACTTTGTATACTGGAGCATTGGGGACGGCTTTCCTGGCTTTGAAATCCTTCTTTGTTTCTAAAAATGAGAATGATCTCAAATTGTGCTCTGAGATTGTCACTGCCTGTGAGTCTTTATCTAAAACATCGAGACATGTGACATTTATCTGTGGCCGAGCTGGAGTTTGTGCTCTTGGTGCAGTTGCAGCTAAGTTCGCTAATGATGGAAGGCTAGTTGACCATTACTTGGCAAAGTTTAAAGATATCAAACTACCTAGTGATTTACCAAATGAACTGCTATACGGCCGAGCAGGGTTCTTATGGGCCTGCTTATTCCTAAACAAGCACATTGGACAGAACACGATATCTAACAATTTTATGAGATCGGTGGTGGACGAAGTTATCGAGGCTGGTAGAACATTGGGTGAGAAGAGTAAATCTCCGTTAATGTATGAATGGCATGGGAAGAAGTACTGGGGTGCTGCCCATGGATTGGCTGGAATTATGCATGTCTTGATGGACATGGAACTAAAACCAGATGAGGTTGAGGATGTCAAGAATACGCTGCGTTACATGATAAAAAATCGATTTCCAAGTGGCAATTATCCTTCGAGCGAAGGAAGCGAATCTGACCGTCTGGTGCATTGGTGCCATGGGGCTCCAGGGGTTGCCCTTACACTCGGAAAAGCAGCTGAGGTTTTTGGAGATGATGAGTTTCTGCAAGCAGCGATAGATGCCGGGGAAGTCGTCTGGAACCGGGGTTTGCTGAAACGGGTTGGCATCTGCCATGGAATTAGCGGTAACACATATGTGTTTCTTTCACTTTACCGATTAACGGGTGATCTAATGTACTTACACAGAGCCAAAGCATTTGCATGCTTTCTGCATCAGAATGCAGAAAAGCTAATTTCAGAAGGGAAGATGCATTCTGGTGATCGTCCTTATTCCTTGTTTGAAGGAATTGGGGGAATGGCATATCTCTTTTTTGACATGGTTGAGCCAAATGCAGCAAAGTTCCCATCTTATGAACTGTAA 1239 45.92 MAERFFPNQMPRFPAEAPPDELASSHSYSATLIPTELLSLPDAALSDRLRQAALNLKETVVRETWTLSGRHPQDNTLYTGALGTAFLALKSFFVSKNENDLKLCSEIVTACESLSKTSRHVTFICGRAGVCALGAVAAKFANDGRLVDHYLAKFKDIKLPSDLPNELLYGRAGFLWACLFLNKHIGQNTISNNFMRSVVDEVIEAGRTLGEKSKSPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKNTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVALTLGKAAEVFGDDEFLQAAIDAGEVVWNRGLLKRVGICHGISGNTYVFLSLYRLTGDLMYLHRAKAFACFLHQNAEKLISEGKMHSGDRPYSLFEGIGGMAYLFFDMVEPNAAKFPSYEL* 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23986278 23988534 + CsaV3_4G033860.1 Csa04g02360 527970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02360 412 SUPERFAMILY LanC-like 70 412 - -
Csa04g02360 412 PANTHER LANC-LIKE PROTEIN 1 412 - -
Csa04g02360 412 Gene3D - 1 412 IPR012341 GO:0005975
Csa04g02360 412 PRINTS LanC-like protein superfamily signature 74 92 IPR007822 -
Csa04g02360 412 PRINTS LanC-like protein superfamily signature 165 180 IPR007822 -
Csa04g02360 412 PRINTS LanC-like protein superfamily signature 226 242 IPR007822 -
Csa04g02360 412 PRINTS LanC-like protein superfamily signature 281 301 IPR007822 -
Csa04g02360 412 PRINTS LanC-like protein superfamily signature 327 340 IPR007822 -
Csa04g02360 412 PRINTS LanC-like protein superfamily signature 382 399 IPR007822 -
Csa04g02360 412 SMART LANC_like_2 71 412 IPR007822 -
Csa04g02360 412 Pfam Lanthionine synthetase C-like protein 72 412 IPR007822 -
Csa04g02360 412 MobiDBLite consensus disorder prediction 1 22 - -
Csa04g02360 412 PRINTS Eukaryotic LanC-like protein family signature 2 15 IPR020464 -
Csa04g02360 412 PRINTS Eukaryotic LanC-like protein family signature 215 227 IPR020464 -
Csa04g02360 412 PRINTS Eukaryotic LanC-like protein family signature 261 276 IPR020464 -
Csa04g02360 412 PRINTS Eukaryotic LanC-like protein family signature 298 319 IPR020464 -
Csa04g02360 412 PRINTS Eukaryotic LanC-like protein family signature 343 361 IPR020464 -
Csa04g02360 412 CDD euk_LANCL 77 408 - -
Csa04g02360 412 PANTHER LANC-LIKE PROTEIN GCL2 1 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02360 - - - csv:101208071 841.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00464 Csa-Chr4:2898472 Csa04g02360 Csa-Chr4:23986278 3.23E-122 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g259 . Blo03g01538 . Bda09g00498 . Bpe08g01031 . . . . Cma01g01198 . Car01g01023 . Sed01g0663 . Cpe02g00711 Bhi09g03396 Tan01g4417 Cmetu07g0753 . Hepe01g1372 Mch11g1087 . Cla11g01777 Cam11g1841 Cec11g1862 Cco11g1872 Clacu11g2003 Cmu11g1812 Cre11g2220 Cone6ag0132 Cone9ag0157 . . Lsi04g01320 Csa04g02360 Chy07g00089 . . . . . . . Bma07g01188 . . Cmo01g01252 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002987 1 1 1 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 2 2 2 2 2 2 4 4 3 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02360 Csa_Chr04 FPKM 0.0 0.0 0.0 0.160011 2.747755 0.354021 1.944604 0.0 0.0 0.0