Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02363 ATGATGAACAAATCCGTGGACGAAGACGAAGAAGAAGAGTGTTTCTACGAGTCCCTTGATCGCATTGCTTCCTCAGGTTCATGTTCCACTTCCAATTCCGATGATGATAGAGATTCAATCGTCAACTCCCCTAATTATGATTCTGAACACCCTTTTCCGATACCCAAATTCCCAATGGCTGTTTCCAACTATGATATTTGGATCTCTGAGCCGGCTTCTGTGTTGGAACGCCGTAGTCGTCTTCTTCGAGAAATGGGTCTTAGCGGCGACCCTTCTCTTTCACGGGCTAATACCGCCTTGGAGTTGGATCATAAAGAAAAGGGTGTTGGTGATTTTGGTCGATCGGTGTCGTCGGATTATTTGACTAGTCAACAACAGCAGCCCCCTGCAATCATCCGCTCCAAATCGGATGGTTCTGCAGATTGTAACAGGAACATGAGCTCTTCACAAGCTTCCGGCAGTGATACTAATAACCAGTTTGTTAAGTCCCGAAGCTGTAAGAGTGATGGAGCACCGTCGGTTTCTTTCGCTGCTTCACAGCATAAGCCGCCTTCTGGAAAAAATTGCAGATGGGCGGATGAGAGTCGAAGTGATTCTTTGGTTGTGAACGCCAATTCGGATCCTGATCCATCGTTGATGTCCCAGAATGGTGTGAATAGACGAGAGGTTAGCGGGGATTCGGTTTGTTCTACTAGTGGAAAGGTCAATGAGGAAGCCTGCACTATCAAAGATCTTGACAATGGGAAAGAGTTTGTTGTGAACGAGATTACTGAAGATGGTATGTGGAACAAGCTCAAGGAAGTTGGGACTGGGAGACAGTTGACCATGGAGGAGTTTGAGATGTGTGTTGGACATTCACCTATTGTTCAAGAACTGATGCGGCGACAGAATGTGGAAGATGGCTGTAATGATAATAACGATTTAAATGCAAATGGGGATACCGGTAGCAGTTCGAAATTGAAAAAGAAAGGAGGCTGGTTTAAGAGCATAAAGAGTGTTGCTAGCACGGTGAAGGGTCAAAAGGAGAGACGTAGCAGTGATGAGAGGGATACTTCATCTGAGAAAGGTGGACGGAGGTCAAGCTCTGCAACAGATGATAGTCAAGATGTTTCCTTTCATGGACCAGAGAGAGTTAGAGTTCGGCAGTATGGAAAATCAAGTAAAGAACTGTCTGCACTCTACAAGAGCCAAGAGATACAGGCCCACAGTGGGTCAATATGGACCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCAAGTGCAGGAGAGGACCGTATCATTCATGTTTGGCAGGTCGTTGAGTCGGAGAAAAAGGGTGATCTACTGATGGAGAAACCTGAAGATGGGAACTTGAGTTTCTTATTTGCAGCTAATGAGTCACCGGAGCCCACTTCATTATCTCCAAATGTGGATAGCCATCATGAGAAAAAGAGAAGAGGGAGATCTTCTATTAGCCGGAAATCAGTGAGCTTGGAACATGTGATAGTGCCGGACACTGTATTTGGGCTTTCAGAGAAACCTATCTGTTCATTCCAGGGGCATCTTGATGTTGTGCTTGACCTATCTTGGTCTAAATCTCAGCACTTGCTCTCGTCTTCAATGGATAAAACTGTGCGGCTCTGGCACTTGTCAAACAATTCCTGTTTGAAAATCTTTTCGCACAGTGATTATGTAACTTGCATCCAGTTTAATCCTATTGACGATAGATACTTCATTAGTGGATCGTTAGATGCGAAAGTTCGTATATGGAGTATCCCAGATCATCAAGTTGTTGACTGGAGTGACTTGCATGAGATGGTGACTGCTGCTTGCTATACACCTGATGGCAAGGGTGCATTGGTTGGTTCTTACAAGGGAAGCTGCCGATTGTACAGTACTTCGGAGAACAAGATGCAGCAAAAAAGTGAGATAAATCTGCAAAACAAGAAGAAAAAATCTAGTCACAAGAAAATAACTGGGTTCCAGTTTGCTCCAGGAAGTTCTTCAGAAGTGCTCATTACATCTGCAGATTCACGCATCCGAGTGGTTGATGGTGTTGATCTGGTCCAGAGATTTAAAGGGTTCCGAAATACAAACAGCCAAATCTCTGCCTGCCTTTCCTCGAATGGCAGGTACGTGATATCAGCCAGTGAGGATTCTCATGTGTACGTATGGAAGCATGAAGCAGATTCTCGACCTAGTAGGAGTAAAGGTGTGACAGTCGTTCGATCATACGAGCATTTCCACTGTCAGGATGTCTCTGTGGCTATTCCTTGGCCTGGTATGGGCGATACATGGGGACTTAACGACGATTATTGTGGAGATGACAATGTGATTGAAAACCATATTGATGAAGTCTCCTCCGCTAACCATCCCCCTTCACCTGTGGAGGCCGAAAATGGCAGTGAGGATTCAGTATTGGCATCTGGTTGCACCAACAGCCCTCTTCATGGAACTCTTTCAAGTGCAACAAACAGCTACTTCTTTGACAGAATCTCAGCAACATGGCCAGAGGAAAAGCTCATTCTGAACACTCGGAATAACCGTAGCCCTCATTCCAGCATGGACATTGCCAGCGGAATGTTTCAAGGATCATCAGCATGGGGTATGGTGATCGTTACTGCAGGTCTTCGAGGTGAAATCAGAACGTTCCAAAATTTTGGATTTCCAGTTAAGATTTAA 2661 44.98 MMNKSVDEDEEEECFYESLDRIASSGSCSTSNSDDDRDSIVNSPNYDSEHPFPIPKFPMAVSNYDIWISEPASVLERRSRLLREMGLSGDPSLSRANTALELDHKEKGVGDFGRSVSSDYLTSQQQQPPAIIRSKSDGSADCNRNMSSSQASGSDTNNQFVKSRSCKSDGAPSVSFAASQHKPPSGKNCRWADESRSDSLVVNANSDPDPSLMSQNGVNRREVSGDSVCSTSGKVNEEACTIKDLDNGKEFVVNEITEDGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEDGCNDNNDLNANGDTGSSSKLKKKGGWFKSIKSVASTVKGQKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELSALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVESEKKGDLLMEKPEDGNLSFLFAANESPEPTSLSPNVDSHHEKKRRGRSSISRKSVSLEHVIVPDTVFGLSEKPICSFQGHLDVVLDLSWSKSQHLLSSSMDKTVRLWHLSNNSCLKIFSHSDYVTCIQFNPIDDRYFISGSLDAKVRIWSIPDHQVVDWSDLHEMVTAACYTPDGKGALVGSYKGSCRLYSTSENKMQQKSEINLQNKKKKSSHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVQRFKGFRNTNSQISACLSSNGRYVISASEDSHVYVWKHEADSRPSRSKGVTVVRSYEHFHCQDVSVAIPWPGMGDTWGLNDDYCGDDNVIENHIDEVSSANHPPSPVEAENGSEDSVLASGCTNSPLHGTLSSATNSYFFDRISATWPEEKLILNTRNNRSPHSSMDIASGMFQGSSAWGMVIVTAGLRGEIRTFQNFGFPVKI* 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23994726 24005626 - CsaV3_4G033890.1 Csa04g02363 527973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02363 886 MobiDBLite consensus disorder prediction 334 385 - -
Csa04g02363 886 MobiDBLite consensus disorder prediction 23 53 - -
Csa04g02363 886 MobiDBLite consensus disorder prediction 779 799 - -
Csa04g02363 886 MobiDBLite consensus disorder prediction 111 230 - -
Csa04g02363 886 SUPERFAMILY WD40 repeat-like 395 721 IPR036322 GO:0005515
Csa04g02363 886 MobiDBLite consensus disorder prediction 337 362 - -
Csa04g02363 886 MobiDBLite consensus disorder prediction 23 39 - -
Csa04g02363 886 MobiDBLite consensus disorder prediction 460 485 - -
Csa04g02363 886 Pfam WD domain, G-beta repeat 506 541 IPR001680 GO:0005515
Csa04g02363 886 Pfam WD domain, G-beta repeat 693 719 IPR001680 GO:0005515
Csa04g02363 886 Pfam WD domain, G-beta repeat 398 430 IPR001680 GO:0005515
Csa04g02363 886 Pfam WD domain, G-beta repeat 547 584 IPR001680 GO:0005515
Csa04g02363 886 Gene3D - 385 742 IPR015943 GO:0005515
Csa04g02363 886 MobiDBLite consensus disorder prediction 116 182 - -
Csa04g02363 886 MobiDBLite consensus disorder prediction 370 384 - -
Csa04g02363 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 432 IPR001680 GO:0005515
Csa04g02363 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 511 551 IPR001680 GO:0005515
Csa04g02363 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 511 545 - -
Csa04g02363 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 585 IPR001680 GO:0005515
Csa04g02363 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 551 585 - -
Csa04g02363 886 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 7 886 - -
Csa04g02363 886 MobiDBLite consensus disorder prediction 198 230 - -
Csa04g02363 886 PANTHER WD REPEAT DOMAIN 44 7 886 IPR040324 -
Csa04g02363 886 PRINTS G protein beta WD-40 repeat signature 418 432 IPR020472 -
Csa04g02363 886 PRINTS G protein beta WD-40 repeat signature 529 543 IPR020472 -
Csa04g02363 886 PRINTS G protein beta WD-40 repeat signature 571 585 IPR020472 -
Csa04g02363 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 432 - -
Csa04g02363 886 SMART WD40_4 638 677 IPR001680 GO:0005515
Csa04g02363 886 SMART WD40_4 504 542 IPR001680 GO:0005515
Csa04g02363 886 SMART WD40_4 545 584 IPR001680 GO:0005515
Csa04g02363 886 SMART WD40_4 587 625 IPR001680 GO:0005515
Csa04g02363 886 SMART WD40_4 678 719 IPR001680 GO:0005515
Csa04g02363 886 SMART WD40_4 392 431 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02363 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101208316 1722.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01487 Csa-Chr4:14621553 Csa04g02363 Csa-Chr4:23994726 2.07E-06 dispersed
Csa04g02363 Csa-Chr4:23994726 Csa05g00180 Csa-Chr5:1050307 1.88E-136 dispersed
Csa04g02363 Csa-Chr4:23994726 Csa07g01715 Csa-Chr7:17626903 3.57E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02363 Csa_Chr04 FPKM 1.921805 1.174278 6.923257 6.767831 7.172349 7.02419 6.828888 11.914896 12.392968 10.344943