Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02365 ATGGATCCTCGTACCCGTTTGGATCATGCTTTGTTTCAGCTCACTCCCACTAGAACCAGATGTGAATTGGTTATCTCTGCCAATGGAGGTGCCACAGAGAAACTGGCATCTGGGCTTCTTCAGCCATTTCTCTCCCACCTCAAATGTGCTAAAGATCAGATTTCTAAAGGGGGTTACTCCATTACTCTTCGCCCAGTTTCAGGATCAAACGCTTCCTGGTTCACTAAGGGAACTCTTCAGAGATTCGTGAGATTTGTTAGCACGCCAGAGGTTCTTGAGAGATTTGTTACTACAGAGAAGGAGATTGTACAGATCGAGAATTCTATGTCCACAGATGCGGATGGAAACACGACAGCTGCCGATTGGAACTCAAAAAGATCTAGCCCCACCGTGAAGGTGAAGGGTGATTCCGATGAATATAATGACGATGCTGCATCGAAGGAGAATCCCAAAATCCGTCTTCAACGTGTTCTGGAGACTCGAAAGGCAGTGCTGCACAAGGAGCAAGCAATGGCTTATGCCCGTGCTTTAGTTGCAGGATATGAGCTGGATCATATTGATGATCTTATATCTTTTGCTGATGCTTTTGGAGCTTCACGTTTGAGGGAAGCATGTATAAACTTTGTGGACTTATGCAAGCGAAAGAATGAAGATAAGCTCTGGATAGACGAAATAGCGGCTATGCAGGCATTCTCTCAGCCAGCATTTCCTTACTCAGAAACTTCTGGAATCATACTAGCCGGTGAAGACAACGAAACTAGCGGAAATGCTCAAGCATCAAGATCTGATTCGACTGCAAGTCAAGGAAGTTTAGATAACAATCAAGATGGAAGCGTTCTGAAATCAGGACAAATTCCACTATTGAATGGGAAAGCTCAAGTGCCAATGACATGGCCCAATCTTCCTCCTCAGTATATGCACAACTTTCAAGGTCCTTTATATCCTCCATATCAAGGATATCTTATGCCTGGAATGCAGATGCCACCGCCATATTACCCGGGGAGTATGCAATGGCAATCAAATGCTGAAGACTCAAGTATTGCTTCTGATCGAGAACCCAATGGTCGTAGGGCTTCTAAGTCTCATAGGAACAAGAAGAAACTTTCACACAAGGAGGTTCACAGATCTTCAGATCAAGAAGGAACTACAGAGTCCAGTGAATCCAGTGTAGACAGTGAATCAGATGAACAATCTGATGATGATAAAAAGCAATATTCAACGGAAAAGATACGTAAGAAAAAGCATGGAAAGAAATCCTCAAGGACGGTCGTTATACGAAATATCAATTACATAACCTCAAAGAGGAATGGTGAAAAGGGCAGCAACTCAGAGGATGGTTCATCAGATGAGGGTGAATTTATTGATGGGAATTCCATCAAACAACAGGTAGAGGAAGCAGTTGGGACATTGGAGAGAAGACATAAATCAACTGGTCGACACCAAAAGAAACAGAATGGCTATGGAAATTCCGATGGCTTAAATGATTCTGAAGGACAGGAGACCAACCGGGTATCGAACAATTCGGAGGGAGAAAAGATCAGTAGCCCATGGGATGCTTTCCAGTCTCTTCTCATGAGAGAAAAGGAGCCGGATAACTCTGGTGAGCTGTCCTCAGTTCAGAATCAAGACGGCCATTTTACACACAAACCTGAGGGAAGGTCACCAATGCTAAACTTAGAATCCGAGAAAGCACCGAGACAGCGGGAAGTTTCAGGTGATTCTTTCCTTGTGACAGATAGGAATTCAGGTAATGAAGGGAGAACACATATTGAAAACTTTGAAGCTGGTGATATTGCCAACCCAATTAATAGGAGAGGAAGTACATATGAAGAATTATTATTTTCACAAAGAAGTGGAGAATCAGGGAACAATGTGAATTCCACGGTGTCCGATTTTACCAATGTGTCTTCCAGAATGAAAAATCAAAGAGAAGGTGATTGGTTTGTCAGCAATCCAGCTGATAAATCTCAAAATCAGTATCAAAACGGTGGTCCCAGAGTTTACGACACCGACTTCTCTTCAGCAGCTCAAGACCATTTCTACGCAGAGAAAAACAAAAAAGATGTTTTGGGGGATGACTCTTTCATGATTCAGACTCGACCATTAGTAGATGACCAATCTGACTTTCAATCTAGACGAGACATAAGCATGGTGTCAGAAATTGTTGGGGATGCTGAAAATGAGTTTGTCAAACAAGAAACCTCGAAAGATGACAAGGCTGCAAATTTTGGTGTCAGTGAACCAGATGACCTTTACATGATGCTTGATCGAGATATCGCAGCAGATCATACGGTTGCATCTTGGACCCCGGAAATGGACTATGAAAATAATTTTTCGACCTTGGGCAATGGTAAGCACAATGATATTGAAGCCAACGGGGGTGATGATAACGAGTCACCTGGTTTGGAGAAGAACAGTAAAAACAAAGAACCTGGGAGCAAAGTTCCAAGTAAAGACGCAAAATCCAAAGCTTTGGGTGGATCTCTTGTCAAGGGCAAATATGATGTTCAATCAAGAACAAGAAAACCACTTTCTGGAAGCAGAAGTACAGTTCCTAAGAGCAAATTTGAGAAGGAAGAAGAAACCAGAAGGAGATTGGAAGAATTGGCGATTGAACGCCAGAAAAGAATTGCTGAAAGGAGTGCTTCTAGTAAGTTTGGTACTGCGAGTTCTAAGCCTGGTGTCTCTAAGATTGAGAAGCCAAAAAGCCAATCCCAGGTTCAAGATGCCAAGAAGTCACCTAAGCCTGTACTTAGGAGTTCAACCATAGATCGCCTTGCAACTGCTCGTACACCTCAGAAAGTATCTTCAACTCATTCACCATCAGTTCAACCAAATAAGCCAATCTCGAGAGCAAATGGCATTAGGACTCCTACCTCAGCGGAAAAGCTCCCTAACATTGACAACAACAACGGATGGCAAGGAAGACGTAGCAGCATTACGAGCTGA 2949 43.07 MDPRTRLDHALFQLTPTRTRCELVISANGGATEKLASGLLQPFLSHLKCAKDQISKGGYSITLRPVSGSNASWFTKGTLQRFVRFVSTPEVLERFVTTEKEIVQIENSMSTDADGNTTAADWNSKRSSPTVKVKGDSDEYNDDAASKENPKIRLQRVLETRKAVLHKEQAMAYARALVAGYELDHIDDLISFADAFGASRLREACINFVDLCKRKNEDKLWIDEIAAMQAFSQPAFPYSETSGIILAGEDNETSGNAQASRSDSTASQGSLDNNQDGSVLKSGQIPLLNGKAQVPMTWPNLPPQYMHNFQGPLYPPYQGYLMPGMQMPPPYYPGSMQWQSNAEDSSIASDREPNGRRASKSHRNKKKLSHKEVHRSSDQEGTTESSESSVDSESDEQSDDDKKQYSTEKIRKKKHGKKSSRTVVIRNINYITSKRNGEKGSNSEDGSSDEGEFIDGNSIKQQVEEAVGTLERRHKSTGRHQKKQNGYGNSDGLNDSEGQETNRVSNNSEGEKISSPWDAFQSLLMREKEPDNSGELSSVQNQDGHFTHKPEGRSPMLNLESEKAPRQREVSGDSFLVTDRNSGNEGRTHIENFEAGDIANPINRRGSTYEELLFSQRSGESGNNVNSTVSDFTNVSSRMKNQREGDWFVSNPADKSQNQYQNGGPRVYDTDFSSAAQDHFYAEKNKKDVLGDDSFMIQTRPLVDDQSDFQSRRDISMVSEIVGDAENEFVKQETSKDDKAANFGVSEPDDLYMMLDRDIAADHTVASWTPEMDYENNFSTLGNGKHNDIEANGGDDNESPGLEKNSKNKEPGSKVPSKDAKSKALGGSLVKGKYDVQSRTRKPLSGSRSTVPKSKFEKEEETRRRLEELAIERQKRIAERSASSKFGTASSKPGVSKIEKPKSQSQVQDAKKSPKPVLRSSTIDRLATARTPQKVSSTHSPSVQPNKPISRANGIRTPTSAEKLPNIDNNNGWQGRRSSITS* 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24021808 24028883 - CsaV3_4G033910.1 Csa04g02365 527975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02365 982 MobiDBLite consensus disorder prediction 852 880 - -
Csa04g02365 982 MobiDBLite consensus disorder prediction 112 145 - -
Csa04g02365 982 MobiDBLite consensus disorder prediction 482 515 - -
Csa04g02365 982 MobiDBLite consensus disorder prediction 252 282 - -
Csa04g02365 982 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 971 - -
Csa04g02365 982 MobiDBLite consensus disorder prediction 779 982 - -
Csa04g02365 982 PANTHER COP1-INTERACTING PROTEIN 7 1 971 - -
Csa04g02365 982 MobiDBLite consensus disorder prediction 131 145 - -
Csa04g02365 982 MobiDBLite consensus disorder prediction 422 437 - -
Csa04g02365 982 MobiDBLite consensus disorder prediction 881 911 - -
Csa04g02365 982 MobiDBLite consensus disorder prediction 800 817 - -
Csa04g02365 982 MobiDBLite consensus disorder prediction 336 588 - -
Csa04g02365 982 MobiDBLite consensus disorder prediction 924 982 - -
Csa04g02365 982 MobiDBLite consensus disorder prediction 112 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02365 - - - csv:101209039 1848.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01051 Csa-Chr2:10192850 Csa04g02365 Csa-Chr4:24021808 2.89E-86 dispersed
Csa04g02365 Csa-Chr4:24021808 Csa07g02329 Csa-Chr7:21588629 1.39E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g264 . Blo03g01535 . Bda09g00491 . Bpe08g01035 . . . . Cma01g01195 Cma09g00882 Car01g01020 Car09g00800 Sed04g3168 Cpe06g00706 Cpe02g00714 Bhi09g03391 Tan01g4426 Cmetu07g0553 . Hepe01g1368 Mch11g1091 . Cla11g01780 Cam11g1844 Cec11g1865 Cco11g1875 Clacu11g2006 Cmu11g1815 Cre11g2223 Cone6ag0128 Cone9ag0152 . . . Csa04g02365 Chy07g00094 . . . . . . . Bma07g01191 . . Cmo01g01249 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003665 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 0 2 2 1 1 2 1 1 1 1 1 4 3 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02365 Csa_Chr04 FPKM 33.603649 34.120838 33.951469 32.363743 21.149897 21.513496 17.529324 37.707806 39.081455 37.180099