Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02366 ATGGCCATCATCAAAACCCTTCAATTTCTCCTCATCCTTTTCCTTTCCTCTCAAAGTTTTGCCCAAAATGAAGAAGACGACGAAGGAATCAAAAGATCAGATTTTCCAAACCACTTCTTCTTCGGAACTTCCACATCCTCTTACCAGATTGAAGGAGGTTATGTCGAAGATGGAAGGGGAACGAGTAATTGGGATGTTTTTTCTCATATTCCAGGAAATATTAAGAACAGTGACACCGGAGATGTGGCCGACGATCACTACCACCGGTTCATGGAAGATATTGAAATGATGAGTTCCATGGGGATGAATGCTTATCGATTTTCCATTTCTTGGACCCGAATTTTGCCCAAAGGAAGATTTGGTAAAGTTAATAGAAGAGGGATCGTCTTCTACAACAAAATCATTGACAATTTGTTGCTTAAAGGCATAGAGCCGTTCGTGACAATTCACCATCACGATCTCCCTGATGAACTTGACAAAAGATATGGAAGTTGGATGAGCTCTCACATGCAGGAAGATTTTGTGTATTTCGCAAAAATTTGTTTCAAAGAGTTTGGAGATCGAGTGAAGCATTGGATTACTATAAATGAGCCAAATTTGGTGACATTGATGGGTTATATAAAAGGAGTTTACCCACCGGCCCACTGCTCGCCGCCTTTTGGCAACTGTTCTGTTGGGAATTCTGATATTGAGCCTCTCATTGTCATGCACAACATGTTACTTGCCCATGCCAAGGCTGTGTTCATTTATCGTACCCAGTTTCAGAAAAAACAAGGTGGATCCATAGGTCTAGTGGCATATTGTCACATGTATGAACCATTAACCAATAATGAGTTTGATCTACAAGCTGTGGACAGAGCCTTGATTTTCAGCTTTGCCTGGGTTTACGATCCTATCGTGTATGGAGATTACCCCAAGGAAATGCGAGAAGTTTTTGGAAGTCAACTTCCAAGTTTCTCGAACACGGAGAAAAATATTATAAAAGGAAGTTTGGACTATATTTGTGTCAATCACTATACCACGCTTTATGCAAAAGATTGTCTTCATTCTCCTTGCTCTAATGGTGGAGATCGTCCCATAAAAGGATTTCTTGACACCATGGGATATCGCAATAGTGTTTCCATTGGAGATCCAACGGGAATGGACAGGTTCTTCGTTGTTCCAAGAGGTTTGGAAAAAACCATTAACTATATCAACCAAAGGTATCCCAACAAGCCTATCTTTGTCACCGAAAATGGATATTCTACGCCACCATCTGATGGAAACAAAGTTGAAGATATAATAAATGACACGAAACGAGTCAATTTCCACAGGAACTACCTTGCTTCCTTGGTTAGAGCAATGAGGAATGGTGCTGATGTGAGAGGGTATTTTGTATGGTCCTTAATGGACAACTTGGAATGGATCCATGGATTCAATACAAGGTTTGGGCTCGTGTATGTGGACTTTCAAACACTTGAACGACGGCCCAAACTTTCGGCCCATTGGTTTGCTTCTCTCCTTGGCGGCAACCTACAACACTCTTCGTCCATTCTAAATAAAAATACATTTGATCATCTCATGTATGATTAA 1572 40.78 MAIIKTLQFLLILFLSSQSFAQNEEDDEGIKRSDFPNHFFFGTSTSSYQIEGGYVEDGRGTSNWDVFSHIPGNIKNSDTGDVADDHYHRFMEDIEMMSSMGMNAYRFSISWTRILPKGRFGKVNRRGIVFYNKIIDNLLLKGIEPFVTIHHHDLPDELDKRYGSWMSSHMQEDFVYFAKICFKEFGDRVKHWITINEPNLVTLMGYIKGVYPPAHCSPPFGNCSVGNSDIEPLIVMHNMLLAHAKAVFIYRTQFQKKQGGSIGLVAYCHMYEPLTNNEFDLQAVDRALIFSFAWVYDPIVYGDYPKEMREVFGSQLPSFSNTEKNIIKGSLDYICVNHYTTLYAKDCLHSPCSNGGDRPIKGFLDTMGYRNSVSIGDPTGMDRFFVVPRGLEKTINYINQRYPNKPIFVTENGYSTPPSDGNKVEDIINDTKRVNFHRNYLASLVRAMRNGADVRGYFVWSLMDNLEWIHGFNTRFGLVYVDFQTLERRPKLSAHWFASLLGGNLQHSSSILNKNTFDHLMYD* 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24032885 24038702 - CsaV3_4G033920.1 Csa04g02366 527976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02366 523 Pfam Glycosyl hydrolase family 1 33 501 IPR001360 GO:0004553|GO:0005975
Csa04g02366 523 Gene3D Glycosidases 14 511 - -
Csa04g02366 523 PANTHER GLYCOSYL HYDROLASE 26 507 IPR001360 GO:0004553|GO:0005975
Csa04g02366 523 PRINTS Glycosyl hydrolase family 1 signature 330 344 IPR001360 GO:0004553|GO:0005975
Csa04g02366 523 PRINTS Glycosyl hydrolase family 1 signature 407 415 IPR001360 GO:0004553|GO:0005975
Csa04g02366 523 PRINTS Glycosyl hydrolase family 1 signature 430 441 IPR001360 GO:0004553|GO:0005975
Csa04g02366 523 PRINTS Glycosyl hydrolase family 1 signature 451 468 IPR001360 GO:0004553|GO:0005975
Csa04g02366 523 PRINTS Glycosyl hydrolase family 1 signature 475 487 IPR001360 GO:0004553|GO:0005975
Csa04g02366 523 SUPERFAMILY (Trans)glycosidases 30 501 IPR017853 -
Csa04g02366 523 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 39 53 IPR033132 -
Csa04g02366 523 PANTHER BETA-GLUCOSIDASE 18-LIKE 26 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02366 K05350 bglB; beta-glucosidase [EC:3.2.1.21] - csv:101220587 1085.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04149 Csa-Chr3:36440161 Csa04g02366 Csa-Chr4:24032885 0 dispersed
Csa03g04150 Csa-Chr3:36455512 Csa04g02366 Csa-Chr4:24032885 0 dispersed
Csa04g02366 Csa-Chr4:24032885 Csa01g03132 Csa-Chr1:27390535 1.39E-146 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g267 . . . . . . . . . . . . . . Sed04g3164 . . Bhi09g02021 Tan01g4428 Cmetu04g2674 . . Mch11g1092 . . . . . . . . . . . . Lsi04g01303 Csa04g02366 Chy07g00095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000954 1 8 1 1 1 0 1 3 0 4 2 4 1 4 4 0 0 1 1 3 3 4 1 2 1 9 2 1 2 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02366 Csa_Chr04 FPKM 3.344115 3.47097 7.430624 8.416219 2.396994 2.79905 3.304912 7.81058 9.392612 7.610797