Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02369 ATGGCTATCAGGGTAACCGTCTCCTTCTCGGGTTACGTCGCTCAAAATCTTGCATCCTCTGCTGGAATTCGTGTCGGTAATTGTCGCGCTGTTCATGAATGCTGGATTCGATCTCGACTTTTTGGTTCAAATCAGAAGCCGGAATTTGACCCTTCTGGTTCCGTGCGCAATTATCATTCCGCCGTTCTTCCGTCTAATTCGAGATGTTGGGTTAAGAATTCGGCATCTGCGCTTGGCACTATCGCCGGAGAAATTGTTGATGAAAGCTGTAGAAACCCAATTGTTCTAGGTTTGATCTCGCTTATGAAGTCTGCTGTAGGTACTTCCGTTTCTTCGCCAATGGCCATGGGCGTGTTTGGTGTTTCTTCCTTCGAAGCCTCTTCGATTATCCCATTTTTACAGGGGTCGAAGACGGTTACCGGTAATGAATCGGTTTCGGGCTCAACGGGCGATGAAATTGAAAGTTATGGAGTTTTTGACTGTGTAATGGACGAGGGCATGAGCCAGCCGCCCGATCCTTCGAAGTTAGAGAAGAGTAGCTGGATATCTCGGTTCTTGAATAACTGTTCTGAGGATGCTAAGGCCATTGCTACAGCTTTGACTGTTAGTGTGCTTTTTCGCTCTTCCTTGGCTGAGCCAAGATCCATACCTTCTTCATCAATGTATCCAACCCTTGACGTGGGCGATCGCATCTTGGCTGAAAAGGTGTCATATTTTTTCAGAAGGCCGAGTGTTTCTGATATTGTCATCTTCAAGGCACCTCCAATCTTGCAGAAAATTGGTTACAAGTCAAATGATGTCTTCATCAAGAGAATTGTGGCAAAGGCTGGTGATTGTGTTGAGGTACGAGATGGAAAACTCTTGGTGAATGGTGTTGCTCAAAATGAGAAGTTCATCTTAGAGCCCCTTTCTTACAACATGGATCCAGTGCTTGTACCCGAAGGGTATGTTTTTGTACTGGGGGACAATCGCAACAACAGTTTTGATTCTCATAACTGGGGTCCACTTCCTGTTGAAAACATCGTCGGTAGATCAGTGTTCCGATACTGGCCGCCATCAAAAGTTTCTGATAAGGATCAAAATGCAGAGAAAGAAGTGGTAGTTTCTTGA 1110 45.41 MAIRVTVSFSGYVAQNLASSAGIRVGNCRAVHECWIRSRLFGSNQKPEFDPSGSVRNYHSAVLPSNSRCWVKNSASALGTIAGEIVDESCRNPIVLGLISLMKSAVGTSVSSPMAMGVFGVSSFEASSIIPFLQGSKTVTGNESVSGSTGDEIESYGVFDCVMDEGMSQPPDPSKLEKSSWISRFLNNCSEDAKAIATALTVSVLFRSSLAEPRSIPSSSMYPTLDVGDRILAEKVSYFFRRPSVSDIVIFKAPPILQKIGYKSNDVFIKRIVAKAGDCVEVRDGKLLVNGVAQNEKFILEPLSYNMDPVLVPEGYVFVLGDNRNNSFDSHNWGPLPVENIVGRSVFRYWPPSKVSDKDQNAEKEVVVS* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24053319 24056080 + CsaV3_4G033950.1 Csa04g02369 527979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02369 369 PANTHER SIGNAL PEPTIDASE I 1 366 IPR000223 GO:0006508|GO:0008236|GO:0016020
Csa04g02369 369 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 1 366 - -
Csa04g02369 369 Gene3D Umud Fragment, subunit A 206 366 - -
Csa04g02369 369 Pfam Signal peptidase, peptidase S26 193 350 IPR019533 GO:0004252|GO:0006465
Csa04g02369 369 ProSitePatterns Signal peptidases I signature 3. 317 330 IPR019758 GO:0004252|GO:0016021
Csa04g02369 369 SUPERFAMILY LexA/Signal peptidase 207 355 IPR036286 -
Csa04g02369 369 ProSitePatterns Signal peptidases I serine active site. 218 225 IPR019756 GO:0004252|GO:0016021
Csa04g02369 369 TIGRFAM sigpep_I_bact: signal peptidase I 194 351 IPR000223 GO:0006508|GO:0008236|GO:0016020
Csa04g02369 369 CDD S26_SPase_I 212 344 IPR019533 GO:0004252|GO:0006465
Csa04g02369 369 PRINTS Bacterial leader peptidase 1 (S26A) family signature 209 225 IPR000223 GO:0006508|GO:0008236|GO:0016020
Csa04g02369 369 PRINTS Bacterial leader peptidase 1 (S26A) family signature 268 280 IPR000223 GO:0006508|GO:0008236|GO:0016020
Csa04g02369 369 PRINTS Bacterial leader peptidase 1 (S26A) family signature 312 331 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02369 K03100 lepB; signal peptidase I [EC:3.4.21.89] - csv:101221060 734.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g02007 Csa04g02369 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01750 Csa-Chr1:14147614 Csa04g02369 Csa-Chr4:24053319 9.95E-55 transposed
Csa03g03081 Csa-Chr3:28951453 Csa04g02369 Csa-Chr4:24053319 4.18E-11 transposed
Csa06g02127 Csa-Chr6:19007762 Csa04g02369 Csa-Chr4:24053319 5.09E-50 transposed
Csa06g03772 Csa-Chr6:30002556 Csa04g02369 Csa-Chr4:24053319 9.59E-15 transposed
Csa02g02007 Csa-Chr2:18626579 Csa04g02369 Csa-Chr4:24053319 2.37E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g833 . . . . . . . . . Cmo12g00452 . Cma09g00203 . Car12g00481 Sed11g0987 Cpe06g00138 Cpe07g00455 Bhi04g00299 Tan02g1908 Cmetu03g1436 . Hepe10g0694 . Lcy13g2022 Cla08g01531 Cam08g2024 Cec08g1598 Cco08g1734 Clacu08g1712 . Cre08g1493 Cone4ag1550 Cone7ag1402 . . Lsi04g01599 Csa04g02369 . Cme03g01996 . . . Bda01g01456 . . . . Sed01g2628 . Cmo09g00197 Cma12g00511 . . Car09g00171 . . Bhi09g03385 Tan01g4845 Cmetu07g1797 . Hepe01g1727 . . Cla05g01999 Cam05g2150 Cec05g2167 Cco05g2215 Clacu05g2142 Cmu05g2012 Cre05g2138 Lsi08g01433 Csa02g02007 Chy07g00098 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003030 2 2 1 1 1 1 2 2 1 2 1 1 2 2 2 2 1 2 2 1 2 2 2 2 3 2 1 3 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02369 Csa_Chr04 FPKM 29.420954 26.381351 46.578499 57.136074 39.016861 39.971489 46.270798 48.943493 58.055599 66.183632