Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02371 ATGGATATCAAAGAATCTGCCGTCCACCAAACCCACGCCGGATTACGCCTTCTGAAGCAGCTGCTGGAGACCCAACAATTTAAAGCTAAGAACCTCGTATTCTCCCCGTTCTCCATCTACACCATGCTCACTCTTCTCGCTAATGGAGCTTCACCCGACTCCCAAATGATCCAACATTTGCTTTCCTTCCTCAAATTTCAATCCCTCCAACAACTCAACTCCTTCCTTTCTAGCCTTTTTCCCTCCGTCTTCGGAGACGCCTCCGCCAATTACGGTCCTATCGTCACCACCGCCAACGGCGTTTGGATCGCCGATGATCTTCCTGTCAAGCCCTCGTTTCAGAAGCTTTTCGAAACTCTCTACCATGGAAAACTCAACATCGTTGATTTCGTGAACAAGCGACGTGAAGTGATGGAAGATGCGAATGCGTGGGTTAAAGAACAGACTCGAGGACTCATTCCCGAAATCTTGAAAGACATAGACGAATCATGCAGAGTGATTTTAGCCAACGCAGTCTACTTCAAAGCTGCTTGGTCTGGTAAATTCGACAAGTACTTAACCAAGGACCAATATTTTCGCCTTCTCGATGGAACCTCCCGCAAAGTTCCTTTCATGTCTGCCTCAACTAGTTACCCCCAACGCGTCTCTGTTTTCGACACCTTCAAAGTCGCATCACTCCCTTACAAAGTCGGCGGCGGAAAATCCTATAAACCTCGCCAGTTCTCCATGCTTATCTTCCTCCCAAACGATCGGGATGGATTGCCTTCTTTGATCGAAAGAGCCTGCTCTGAGTCTGGATTCATTGACCGCCATGTGCCTCCAAAAGCGGTGATGGTACATGAATTTAAGATCCCCAAGTTCAAATTCGGTTTGGATTTCAAATTAGAGGATACCCTGAGGGAATTAGGGATGGGTTCGGTGTTTTCGGGGGAGTCGTCGGGTTTCACGGGTATGGTGGAAGATCCGGCGGGGAGAGAATTGTATGTTTCGAAGATGTTTCATAAGGCAGTGATTAGCGTCGACGAAGAGGGGACGGAGGCGGCGGCGGTGACAATGGGATTAATGTTGGGATGCTGTCTTAGGAGAGAGGAAGCGAAGCTTAAATTTGTTGCGGATCATCCCTTTTTGTTTGTGATTAGAGAAGAAGGGAGTGGAGCTGTTCTGTTCCTGGGTCAGGTTCTTGATCCTTCTCTCCATTAA 1200 48.08 MDIKESAVHQTHAGLRLLKQLLETQQFKAKNLVFSPFSIYTMLTLLANGASPDSQMIQHLLSFLKFQSLQQLNSFLSSLFPSVFGDASANYGPIVTTANGVWIADDLPVKPSFQKLFETLYHGKLNIVDFVNKRREVMEDANAWVKEQTRGLIPEILKDIDESCRVILANAVYFKAAWSGKFDKYLTKDQYFRLLDGTSRKVPFMSASTSYPQRVSVFDTFKVASLPYKVGGGKSYKPRQFSMLIFLPNDRDGLPSLIERACSESGFIDRHVPPKAVMVHEFKIPKFKFGLDFKLEDTLRELGMGSVFSGESSGFTGMVEDPAGRELYVSKMFHKAVISVDEEGTEAAAVTMGLMLGCCLRREEAKLKFVADHPFLFVIREEGSGAVLFLGQVLDPSLH* 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24064353 24066493 + CsaV3_4G033970.1 Csa04g02371 527981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02371 399 PANTHER SERPIN-ZX-LIKE 16 396 - -
Csa04g02371 399 SUPERFAMILY Serpins 9 396 IPR036186 -
Csa04g02371 399 Gene3D Antithrombin, subunit I, domain 2 29 342 IPR042178 -
Csa04g02371 399 Gene3D - 178 391 IPR042185 -
Csa04g02371 399 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 16 396 IPR000215 GO:0004867|GO:0005615
Csa04g02371 399 CDD serpinP_plants 9 396 - -
Csa04g02371 399 Pfam Serpin (serine protease inhibitor) 10 396 IPR023796 -
Csa04g02371 399 ProSitePatterns Serpins signature. 369 379 IPR023795 -
Csa04g02371 399 SMART serpin2 15 396 IPR023796 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02371 K13963 SERPINB; serpin B - csv:101209771 761.911
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g02005 Csa04g02371 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02004 Csa-Chr2:18613943 Csa04g02371 Csa-Chr4:24064353 1.67E-104 dispersed
Csa02g02005 Csa-Chr2:18617246 Csa04g02371 Csa-Chr4:24064353 3.97E-107 dispersed
Csa04g02371 Csa-Chr4:24064353 Csa04g02372 Csa-Chr4:24067511 3.79E-16 tandem
Csa02g02003 Csa-Chr2:18610709 Csa04g02371 Csa-Chr4:24064353 3.83E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g831 . . . . . . . . Cmo05g00215 . . . . . Sed08g1817 . . Bhi04g00301 Tan02g1904 Cmetu03g1500 . Hepe10g0696 . Lcy13g2026 Cla08g01534 Cam08g2027 Cec08g1603 Cco08g1738 Clacu08g1716 . Cre08g1499 . . Cone17ag1302 . . Csa04g02371 . Cme03g02000 Blo17g00830 . Bda08g01319 . . Bpe05g00068 . . . . . . Cma05g00209 . . Cpe11g00174 . . . . . . . . . . . . . . . Lsi08g01436 Csa02g02005 Chy07g00100 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000825 2 1 6 2 1 2 0 2 2 4 1 2 3 4 4 7 2 3 2 2 4 1 2 5 5 4 4 7 5 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02371 Csa_Chr04 FPKM 23.070415 26.024296 22.753498 24.357187 49.079483 52.017948 52.444019 25.216684 26.501886 25.90572