Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02376 ATGGAGAATGTCAAAGTTCTCACCATTTCCGACCTAATCCAGTGCCGTCTTCCTCTAACCGGAACTTACAATTTTCATCAATCTTCTTCATTCAATTCACTCCCAACAGAATTGCTTCAATCAAATCCAAGACCAGTTCCATCTAACTCCTCATCTCCTGCCGAATCCAATCCCAACCCTGAAGTTCTTACTTCTCTTAAATATCCCACCATCCTCATTGGAACCCTAACTCTCCCTTTCGATGCTCCTCGGTCGTCCATCTTAAAGCCTTTCTGTTCATGCCCCACCAACAATTGCTTCCAGTTCACTGATGGTTCCGGTACTGTTTGCTGTGATATACTTGATATCGACATTCGAATGTTCGGGAAAGAGATTCGGGTCTTATCTTGGAATTTCATTCCGTTGAGAAGCGCTGGTGGTTTCTTGGAAATTATTAAATGGGAATTTCTTTCCCCAAGCTGGGTACTTCGTCAATGCTCCGATGTCGATCCAGTTCTCTTGGATATAGGTACTTTCTCTACGCCTACCGATAAGTTGAAGGTTCGGCACTGTGTTTGTGGTTTATTACAGTCGGTTGGTCCAATTACTATTGTTCCGTGCACATTAGGACAGAGGAATTTACAGATCAACGGGAAGTCTGATTCTTCTGCGGTCTCGAAAAAACTTCGAGGGTTTATGGCTCATATAATGATCTGCGAGTGTCGGTCATGTACTTCTAAGGAACCAATGAGTTTACCCGACAATTCAGTTCGAGAACTTAATACTCATTCATTTGTTAATCCAACAATTGTGTATCTTTGCGGTTCAGCGTCGTCTTGGCATCCTGTCCTATCGAAATTTGTGGGTTTAGGGTTTATAAATTTTTGGGGTTTGAAAAAGAAGTTGGTTTCCATTGGTAAGGCAGAGTCCTGTTTGATGTATGTCACCTCGGAGAAATCCTCTCTCCATTTATCTAGGTTATCTCGTACAAGGCTTCCATGCAAGAAAAGTGTCATCAAGGGGAAGGGAGAATGTGGATCATACACTGGTATAATTAAAGGAGTATATATGCAAGGAATGCTTGTTGAGCTCGACAACGAGGTCTGGGTTTTGTTGACCGATCATTTTCTTTCTCCACCTCATAGCATTAGGGTGGGCGCCATTATATCGGTTCGGAATGCACACTTTGTGAATCCTAGATTTCCTTGGTCAAAATTGCTTTTACTTGGTACTTGCGCCAAAACTAGCATCTTTGTGCAGCTATTTTCTCCATTGGAAACCAAATGTCACGTCCTTTCTCAGTCAAGATCTATGTTGGGGAAGTTTATCCCCACCTTACCCTTTTCGACTAGATTATGGGTATTGTTTCTTATTTCATCTTTCCGAAAGATGTTTGCTGGGAATTTATCTGAAAAAGAGATTTTGGGATCAAAACATAATGAAGGACTGGTTCAAATGTATGCAAAATTGCATTTACCTATGTCAATGTATCGATATCAACATGGATCAATGATGAAACTGTATGAGCATGATTCATGTGGCTGTGCCAGTGAACCATGCAACATTAACCTTGAAACTGTGGTCCCTGTCTCTGTTCTAATTTTTTATTGTAATTCTACATGTATGAGAACCATGAGTTTGAAAAATGAAAAAGTTGTTCAGTATGAATACAACCAGCTTGACCACTTCAGACTTCTACCACGTGGAGGTAAATCTTCTCATGATACACCCAGGAAAATTTATCGTAGCGAAGACATTGGCTTTGTTTTGGTTGGTAGTTTGAAGATTTCCACGTATTCTGGAAGATTGCAATTGGTTGATGCAACTGGAGGTATTGATGTTATGGTACCAGATCTTCCGTCAACTTGGAACGTAAATGGCATATATGAGGTATCAAAGTATATTGTGGTCATTGAAGGCATTCCACAAATGGAGAAGTATTTGATCAATCAGTCATTCTCATGCCGGAGATTTTTTCAGAGCGTCTCATCAGAAAGAGATCTTAGCACAACAATTTATGTTTATTTTCAGTACAGAAACGCATCGTGCAAAAAACTTCCTTCATATTCTTGCAATGACAATGCATCTGATCTTGTGATATTCGAAAGTGGAACTTATGATTTGCTAGAAGTAACACACAAGTTTCCCATGTCACAAAAGTTTCAAGGCAAACATTTGGCACCAAACACGTCAAGCATGTTCGTTGAGGCTGTCCTCCATCCTTGGAATTTATTTCTCACCGAAAGTGAGAAAAAATATTCAACAAAGGTTTCATTGAAGCAGCAGAGGGAAGATGCTGGAACTGCAAATGATCCGAAAGATGTTAATAAGAGACTTAAAATTGATGATCCATCAAGGAGGGTAGAAGGTTCAAGTATAGCATGTGACTCTGACCAGTCTAGCTGTGGGTTTAGTGGTTGTTGCGCTTGTTACAAAGTACCTAATGAGGAACAGAAATGCTGCAACTTGAGTCTTCACAGAATTTCTTGTATTGCTACTATTAGGAGTTCAGATCATAGAAGCCAGTACATAGGATTCTTGCAGAACACAAGAACTGAACCAAATAGTGGTGGGGGTTCCAGATTAAGTGCTCAAAAGATTTTGTTAGAGATTCGGCCTGAAAACTTTTCTAAATATCAGTTCCTGCAGATTGGTAGTTTCTACATCACAAAACGTAATAACAATCATTCTCTGTTCAACATGGAGGAAAGCAATTGTGTCAACAGCCAAAAATTTCTTATAACTTCATGTACTCAATTATGGTGCATCTCATTCACTTTTGGTAATGATATTCTCCATGGTACTGAATCAAACAACACTCAGTTCAGTGACTTTCCCATCTGTGATGGTGGAGTGATCTCAGGAGATCAGATTGATTTGCACTGCAGATCCCTTTCAGATATCTATCTTCATCTTCCCGCAAATGCAAAAGATAGTTTGGTGTTTGATCTTGAAAAACAGGAAGAAAATTCAACCAAACTAGTTATAAAACCTGAAGAGGCCGGCAAACCCTGTTATAGAGATGGGATATCATCAGATATGCAAACCTCTGGTTTCCATGGAACTGACTGTCTCTTTCCTGAAGGAAACTTATCATCCGTAAAAGGTCATGTGGTTGCAGTTCACGATCTTCATCAAAGTTGCATTGATTCTAATTTAGAATGTCAAAGTATTAAAGGTGGCCTGTGCAGATTCCCTGTGGGTGGGAAAAGCACTTGCATTCATCTTCTGATGGAGGACCAAATTGTAAAAATTTTTGGTTATCTGAAGAATCATGCTTTACCTGTTGGATTTGGACCTGGTGTGAGTGCAACTTTCCACCGAGTTTTAGAGCTTGGGGATCTAAGGAGATTGATGTTGACTCCGCTATCTTTCATAGATATCAATTCTTTTAGCGTACTTGATCATTCCTTTACTGAGAAGTATCCTGACATTGTCTCCTATTCAGACACTATATCTTTGCAACTATTTTCTCAACTGATTAACTCCTCCCACTGCAAGTTAACAAAGTTCCGTTGTAGAGTTGTTGCTGTCAATTTTTTAGTCCTGGAGAAGAACATTGATCACGTCAATTTGCAAGTTGAAATTTCTCCAAGGCAACCTCTTGTAAAGATTCCTCTTGCTGGATTCATTTTGGATGATGGCTCATCTAGATGCAACTGCTGGGCGAGTGGTGAAAGAGCAGCAGCTTTGTTGCGGTTGCATGATCCACTTCCACAGTTAGCTTTTAAGAACATTGACCGGGTATTCAAATGGACTGGGATGAATCATTACTCCCCTGGTACTGCAAGCTATCATCTGAGCAAGGTTCTGAAGAACCACGGTAGAATTATTGTGAGAAGTTGTGGATCAATCCTCAATTCTTATCAAGACCTTGATATTTCTCTTGCTTCAGATGATGCTCTCAGCAGTGCGAATGAGAGTTTTATCAAGTTCATAATAGTGAATTCATGTATTAGTGCCATTTGGACTCTCATTGGGAGTAAGTTGGATTCAGATGCTGTTAGAAATCTGTTAAAAGAACACACACTGGAACCATGGTTGATGGAGTCTCATAATATATGGGTGACGGATGTTCATCGAACAAATGCTCTTAAGGAGGCCAAAAATGCTATCCTAGAACTGGCGAACGGTTAA 4116 39.97 MENVKVLTISDLIQCRLPLTGTYNFHQSSSFNSLPTELLQSNPRPVPSNSSSPAESNPNPEVLTSLKYPTILIGTLTLPFDAPRSSILKPFCSCPTNNCFQFTDGSGTVCCDILDIDIRMFGKEIRVLSWNFIPLRSAGGFLEIIKWEFLSPSWVLRQCSDVDPVLLDIGTFSTPTDKLKVRHCVCGLLQSVGPITIVPCTLGQRNLQINGKSDSSAVSKKLRGFMAHIMICECRSCTSKEPMSLPDNSVRELNTHSFVNPTIVYLCGSASSWHPVLSKFVGLGFINFWGLKKKLVSIGKAESCLMYVTSEKSSLHLSRLSRTRLPCKKSVIKGKGECGSYTGIIKGVYMQGMLVELDNEVWVLLTDHFLSPPHSIRVGAIISVRNAHFVNPRFPWSKLLLLGTCAKTSIFVQLFSPLETKCHVLSQSRSMLGKFIPTLPFSTRLWVLFLISSFRKMFAGNLSEKEILGSKHNEGLVQMYAKLHLPMSMYRYQHGSMMKLYEHDSCGCASEPCNINLETVVPVSVLIFYCNSTCMRTMSLKNEKVVQYEYNQLDHFRLLPRGGKSSHDTPRKIYRSEDIGFVLVGSLKISTYSGRLQLVDATGGIDVMVPDLPSTWNVNGIYEVSKYIVVIEGIPQMEKYLINQSFSCRRFFQSVSSERDLSTTIYVYFQYRNASCKKLPSYSCNDNASDLVIFESGTYDLLEVTHKFPMSQKFQGKHLAPNTSSMFVEAVLHPWNLFLTESEKKYSTKVSLKQQREDAGTANDPKDVNKRLKIDDPSRRVEGSSIACDSDQSSCGFSGCCACYKVPNEEQKCCNLSLHRISCIATIRSSDHRSQYIGFLQNTRTEPNSGGGSRLSAQKILLEIRPENFSKYQFLQIGSFYITKRNNNHSLFNMEESNCVNSQKFLITSCTQLWCISFTFGNDILHGTESNNTQFSDFPICDGGVISGDQIDLHCRSLSDIYLHLPANAKDSLVFDLEKQEENSTKLVIKPEEAGKPCYRDGISSDMQTSGFHGTDCLFPEGNLSSVKGHVVAVHDLHQSCIDSNLECQSIKGGLCRFPVGGKSTCIHLLMEDQIVKIFGYLKNHALPVGFGPGVSATFHRVLELGDLRRLMLTPLSFIDINSFSVLDHSFTEKYPDIVSYSDTISLQLFSQLINSSHCKLTKFRCRVVAVNFLVLEKNIDHVNLQVEISPRQPLVKIPLAGFILDDGSSRCNCWASGERAAALLRLHDPLPQLAFKNIDRVFKWTGMNHYSPGTASYHLSKVLKNHGRIIVRSCGSILNSYQDLDISLASDDALSSANESFIKFIIVNSCISAIWTLIGSKLDSDAVRNLLKEHTLEPWLMESHNIWVTDVHRTNALKEAKNAILELANG* 1372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24094047 24101264 + CsaV3_4G034020.1 Csa04g02376 527986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02376 1371 Pfam CST, telomere maintenance, complex subunit CTC1 66 380 IPR028262 GO:0000723
Csa04g02376 1371 PANTHER CST COMPLEX SUBUNIT CTC1 1 1369 IPR042617 -
Csa04g02376 1371 MobiDBLite consensus disorder prediction 750 771 - -
Csa04g02376 1371 MobiDBLite consensus disorder prediction 38 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02376 - - - csv:101221535 2753.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g824 . Blo12g00943 . . . . . . . . . Cma09g00208 . . . Cpe06g00142 . . . . . . . . . . . . . . . . . . . . Csa04g02376 . . . . . . . . . . Sed01g2640 . . . . . . . . Bhi09g03368 Tan01g4831 Cmetu07g1013 . . . . Cla05g02003 Cam05g2154 Cec05g2172 Cco05g2219 Clacu05g2146 Cmu05g2016 Cre05g2142 . . Chy07g00105 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005908 1 9 1 1 0 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 4 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02376 Csa_Chr04 FPKM 19.958733 18.890512 6.626359 5.553554 7.965223 8.07005 7.794901 5.20998 5.285418 4.760151