Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02386 ATGCAAAACAACGGTTCTGATTCGCAGCCACAGGAACCAAATCAACGGCATCAACAACAGCCGCACCCATGGATACCGCCAATGCAGTACCCGCCGCCGCCCATGGTAATGCCGCATCATATGATGACGCCACAGCATTATATGGCGCCGCCGTTACCGCCGCCGTATATGCATTATCATCATCAATATCACCACCATCATCTCCCTATTCAACCTTCGCAACCGCTGAAGGGATCTGGTAGTGAAAATAAGACGATTTGGGTCGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCCATTCCTGCTTCTCTTCTGTCGGCGAGATTTCGTCTATGAAAGTCATTCGTAACAAGCAAACGGGTTTGTCTGAAGGGTATGGATTTGTAGAATTTTTATCTCATACAACTGCTGAGAAAGTTCTTCAGAACTATTCGGGAATGTTCATGCCAAGTACAGAGCAGACTTTCCGCCTGAATTGGGCGACATTTAGTACTGGTGACAAGCGATCAGATAATGATCCCGATCTTTCTATTTTCGTTGGAGACTTAGCTGCAGATGTTACCGATTCTTTGTTGTACGAAACATTTTCTAGTAAATTTCCTTCTGTTAAAGCAGCAAAAGTTGTAATTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTTGTGCGGTTTGGAGATGACAATGAAAGGTCTCAGGCCATGACTGAAATGAATGGTATATATTGTTCAAGCAGACCCATGCGCATCGGTGCTGCAACACCCAGAAAGTCTTCTGGATATCAGCAGCAGCATTCTTCACAAGGAGGAGGATATTCAACAAATGGTTACTTCAGCCAAGGTCTCCAATCTGAAGGAGATTCTGCAAATACAACTATATTTGTTGGAGGGCTTGATCCTAATGTCACTGATGAAGACCTGAGGCAACCTTTCTCACAGTACGGTGAGATTGTATCTGTTAAAATACCAGTTGGTAAAGGATGTGGATTTGTCCAATTTGCCAACAGAAATGATGCTGAAGAGGCTTTGCAGAAACTAAATGGAACTGTAATTGGCAAGCAAACTGTTCGTCTTTCTTGGGGTCGAAATCCAGCAAATAAGCAGTTCAGAGATTTTGGGAACCAATGGAATGGAGCTTACTACGGAGGGCACATATATGATGGATATGGATATGGGTTGGCATCTCCTCACGATCCAAGTATGTATCACGCAGCTTATGGAGCTTATACTGTCTATGGAAACCATCAGCAACAAGTAGAACAGATGAAGTTACTTTAG 1281 43.87 MQNNGSDSQPQEPNQRHQQQPHPWIPPMQYPPPPMVMPHHMMTPQHYMAPPLPPPYMHYHHQYHHHHLPIQPSQPLKGSGSENKTIWVGDLHHWMDESYLHSCFSSVGEISSMKVIRNKQTGLSEGYGFVEFLSHTTAEKVLQNYSGMFMPSTEQTFRLNWATFSTGDKRSDNDPDLSIFVGDLAADVTDSLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEMNGIYCSSRPMRIGAATPRKSSGYQQQHSSQGGGYSTNGYFSQGLQSEGDSANTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRDFGNQWNGAYYGGHIYDGYGYGLASPHDPSMYHAAYGAYTVYGNHQQQVEQMKLL* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24187265 24191532 - CsaV3_4G034120.1 Csa04g02386 527996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02386 426 MobiDBLite consensus disorder prediction 254 278 - -
Csa04g02386 426 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 17 420 - -
Csa04g02386 426 SMART rrm1_1 85 160 IPR000504 GO:0003723
Csa04g02386 426 SMART rrm1_1 293 360 IPR000504 GO:0003723
Csa04g02386 426 SMART rrm1_1 178 252 IPR000504 GO:0003723
Csa04g02386 426 MobiDBLite consensus disorder prediction 257 278 - -
Csa04g02386 426 MobiDBLite consensus disorder prediction 1 30 - -
Csa04g02386 426 Gene3D - 83 163 IPR012677 -
Csa04g02386 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 364 IPR000504 GO:0003723
Csa04g02386 426 Gene3D - 165 283 IPR012677 -
Csa04g02386 426 Gene3D - 284 395 IPR012677 -
Csa04g02386 426 SUPERFAMILY RNA-binding domain, RBD 281 384 IPR035979 GO:0003676
Csa04g02386 426 CDD RRM2_SECp43_like 176 255 - -
Csa04g02386 426 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 17 420 - -
Csa04g02386 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 164 IPR000504 GO:0003723
Csa04g02386 426 CDD RRM1_SECp43_like 85 165 - -
Csa04g02386 426 CDD RRM3_NGR1_NAM8_like 291 362 - -
Csa04g02386 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 256 IPR000504 GO:0003723
Csa04g02386 426 MobiDBLite consensus disorder prediction 1 22 - -
Csa04g02386 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 249 IPR000504 GO:0003723
Csa04g02386 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 154 IPR000504 GO:0003723
Csa04g02386 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 357 IPR000504 GO:0003723
Csa04g02386 426 SUPERFAMILY RNA-binding domain, RBD 159 282 IPR035979 GO:0003676
Csa04g02386 426 SUPERFAMILY RNA-binding domain, RBD 55 150 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02386 - - - csv:101211504 769.615
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01994 Csa04g02386 CCT
Csa02g01994 Csa04g02386 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00758 Csa-Chr2:6289860 Csa04g02386 Csa-Chr4:24187265 5.55E-06 dispersed
Csa02g01195 Csa-Chr2:11747886 Csa04g02386 Csa-Chr4:24187265 2.68E-168 dispersed
Csa04g02386 Csa-Chr4:24187265 Csa07g02337 Csa-Chr7:21640453 3.49E-14 dispersed
Csa07g00747 Csa-Chr7:5262014 Csa04g02386 Csa-Chr4:24187265 8.36E-15 dispersed
Csa01g01085 Csa-Chr1:6732660 Csa04g02386 Csa-Chr4:24187265 1.45E-141 transposed
Csa02g00557 Csa-Chr2:3918093 Csa04g02386 Csa-Chr4:24187265 8.31E-13 transposed
Csa02g02434 Csa-Chr2:21482430 Csa04g02386 Csa-Chr4:24187265 3.32E-08 transposed
Csa03g03966 Csa-Chr3:34655938 Csa04g02386 Csa-Chr4:24187265 9.76E-09 transposed
Csa04g00086 Csa-Chr4:488194 Csa04g02386 Csa-Chr4:24187265 1.11E-06 transposed
Csa04g01015 Csa-Chr4:7943232 Csa04g02386 Csa-Chr4:24187265 1.49E-08 transposed
Csa05g00423 Csa-Chr5:2804406 Csa04g02386 Csa-Chr4:24187265 3.59E-146 transposed
Csa07g00115 Csa-Chr7:1012143 Csa04g02386 Csa-Chr4:24187265 1.64E-15 transposed
Csa02g01994 Csa-Chr2:18563479 Csa04g02386 Csa-Chr4:24187265 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02386 Csa_Chr04 FPKM 16.765511 19.992876 17.853336 20.760466 20.907682 18.097944 20.668369 12.474998 12.263356 13.109495