Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02389 ATGTCAGCCTCGGCGAACGAAACAGGTAGGAGCATGCTTGTGGCTGCCATCATGGATATTGTAACATCCAATTGTGATAGGTTAGAGAATCTAGCTTTTGAGCCATCTTTGCCTGCACATGCCGAAACTAGAGATATTGCAGCAGCTATTCAAGTTATTGAAGAGGGTGGTTTGGAATTTGATGAACCAAATGGCGGTGATGATGAAGATGGTGGAAGAGGAATCAAAGGAATAGGAATTAAGATTCTTGGAGGCACTACTATTTTGGGTCTGTCGAGAGTAAGTGGGTTTGTGAAGTTGGCATATTCCGATGGTGGTCATGTAGAACTGGTAAAAAATACATCTAAAACTTCAGTATCAGAGAAGCATGATAGCTCTCTCATTGCTAATTCTTCTGTTGTTCCTGGTTTGTGGGATGATTTGCATTGTGAGCATGTTGCTGTACCTTTTGCAGCGTGGGCGTTGGCAAATTGGTCAATGGCGTCAGAACTGAACAGATTGCACATCCATGAACTAGATCAAGATGGACATGCTGTTATGACTGCTTTAATGGCACCTGAAAGGTCGGTGAAATGGCATGGAAGTTTGGTGGCTAGGCTTTTACTAGAGGACCGTAATCTCCCGTTAAATGATTCTGTTTCTGATTGGAGCTCAAGTCTTCTTTCTACTGTTTCTCATGCAAGTAAAAATGATGACATCCCTTTGGCTCAGGCTGCTCTGTGTGCATTTTTGGCTTCTGTTGAACGTTTCCCTGAGGCACAAAAGAAGATAATGGAGAGGGGTTTGCATCTAATGAGAGATGCTGCTGTGCGGACCCAAAAACATGGAGAGGTTCAAGAATCGTTAGCAAAAGCATTAGAGTTACTGAGCACTGGATGCATGCATCTATCAGCTGAAGAGAGTCAGAGATGGTCTGCTATATTACTTCAATGGGTCTTTGGCAAAATTTCCTCTGAATCCTTGAGGTCTTCTGCAACTAAAATTTTGTCTTGCATCCTTGAAGACTACGGACCAAGCTCCATACCTATTTCTCAAGGATGGTTGGCCATATTGCTGACTGAAATACTAGGTTCTATCAAAAAGCCTGCAGCGAATGGAGCTACTCAGCTTCAAAATGACAAAGTGAAGACGAAGATTGAGCAGTCAAACATTGTTTTTGCCAGTCAAGTTGCTAGTCAGCTAGCGAGTGCTGTTGTGAACCTGGCGGTACACCAGTTTGGGGCAACTACTGATTCATTAGATACCTCTCCGTTGGCAGATTTACTTTCACGTGAACCTTTTGTAGCTCCGTTAAAGAGTATAAAAAAAGAGAATAGTCCAAAGTTTGATGCAGCAGATTCTGCAATGGCAACGTTAAAGGGGATTAAAGCACTGACCGAAGTTTGTGCAGACGATTCTTCATGTCAGAGCAGAATAGCTGATTTTGGCATTCTCTTTTTGCTGAGACGCCTTTTGTTATGTGATGATTATGAGAAGCTGGCAGCCATGGAAGCTTATGATGCATCTAGAGTCCTTGAGGCTCAAGAACTTGTATCAAATGCCTCTGGGGAACCATCACTTTCAGAGAAGAAGAATGATTCGTCTAGTGTCCGAGTACCCCCTACAGCTCACATCCGTAGACATGCTGCGCGGCTTTTAACCATCCTTTCACTTCTAGAGAAAGTCCAGAAGGAGATTTTCTCGGATGAAGAATTTTGTAGATGGCTTGAGGACTGTGCCAATGGGGCCATTCCTGGTTGCCATGATGCTAAACTGCAAAGTTATGCTAGAGCCACACTGTTGAATATATTTTGTATTAACCGTAGAGCTTCTGAAAATGGGTCTCTCTCTGATTCCGAGTCTGCTGAGTCTACAAACAGGAAAAAGAATTGTCCCCGTTATGATGATATGGTTTTTTTAATAAATCCTGAACTGCCTCACTGGAAGGTTCATGAAGAAAAGGAGCAGGACACTGTTGGAAAGGATGAATCTTCTCTTTCACAGGCTAATTTCATTGATAGTGATGGTGCAGCTGTGGCAAGGCATGGAAATGATAACACCTCTTTATCTCATGTGTCTCAGAATGATTCTAGGCCAGATTCTCCTTTGGTAGATGTTGTTTTTATTCATGGCCTCCGAGGTGGACCTTACAAGTCATGGCGCATATCTGAGGACAAATCCTCCACAAAATCTGGACTGGTAGAGAAGATTGACCAGGAGGCAGGGAAACTTGGGACGTTTTGGCCAGGTGAATGGCTTTCATCTGACTTCCCAAGGGCTCGTATGTTTACCCTTAAATACAAGACAAATCTCACTCAGTGGTCTGGGGCTAGCCTTCCTCTTCAGGAAGTCAGCTCCATGCTACTGGATAAGCTCGTCGCTGCTGGAATTGGGGATCGGCCTGTTGTATTTGTTACTCACAGCATGGGAGGGCTGGTTGTCAAGCAAATGTTGTATAAAGCCAAGACAGAAAATATCGATAACCTTGTGAAGAATACTGTGGGAGTTGTCTTCTATAGCTGCCCACATTTTGGCAGCAAACTAGCAGACATGCCTTGGCGAATGGGTCTTGTGTTCCGCCCTGCTCCTACTATAGGAGAGCTGAGAAGTGGGTCTCCTAGATTGGTGGAGTTGAATGATTTTCTTCGTCACCTCCATAAGAAAGGATTGCTTGAGGTCCTTAGTTTCTGTGAGACGAAGGTGACTCCAATTGTTGAAGGTTATGGAGGATGGGCTTTCCGAATGGAAATTGTTCCCATTGAATCTGCATATCCTGGATTCGGCGAACTAGTTGTATTAGAATCAACGGATCACATAAATTCGTGTAAGCCCCTCAGCCGCACTGACCCTTCATACACTGAGACATTGGAATTTTTGCAGAAATTGAAATCTCGCTATGACACAAGGATTGAAATATGGATGGATATAACATTCTTCCTCTACCAAAATGCAAGTGACATCATCGACAATCTGAATGCTAACATAGCATAG 2970 43.54 MSASANETGRSMLVAAIMDIVTSNCDRLENLAFEPSLPAHAETRDIAAAIQVIEEGGLEFDEPNGGDDEDGGRGIKGIGIKILGGTTILGLSRVSGFVKLAYSDGGHVELVKNTSKTSVSEKHDSSLIANSSVVPGLWDDLHCEHVAVPFAAWALANWSMASELNRLHIHELDQDGHAVMTALMAPERSVKWHGSLVARLLLEDRNLPLNDSVSDWSSSLLSTVSHASKNDDIPLAQAALCAFLASVERFPEAQKKIMERGLHLMRDAAVRTQKHGEVQESLAKALELLSTGCMHLSAEESQRWSAILLQWVFGKISSESLRSSATKILSCILEDYGPSSIPISQGWLAILLTEILGSIKKPAANGATQLQNDKVKTKIEQSNIVFASQVASQLASAVVNLAVHQFGATTDSLDTSPLADLLSREPFVAPLKSIKKENSPKFDAADSAMATLKGIKALTEVCADDSSCQSRIADFGILFLLRRLLLCDDYEKLAAMEAYDASRVLEAQELVSNASGEPSLSEKKNDSSSVRVPPTAHIRRHAARLLTILSLLEKVQKEIFSDEEFCRWLEDCANGAIPGCHDAKLQSYARATLLNIFCINRRASENGSLSDSESAESTNRKKNCPRYDDMVFLINPELPHWKVHEEKEQDTVGKDESSLSQANFIDSDGAAVARHGNDNTSLSHVSQNDSRPDSPLVDVVFIHGLRGGPYKSWRISEDKSSTKSGLVEKIDQEAGKLGTFWPGEWLSSDFPRARMFTLKYKTNLTQWSGASLPLQEVSSMLLDKLVAAGIGDRPVVFVTHSMGGLVVKQMLYKAKTENIDNLVKNTVGVVFYSCPHFGSKLADMPWRMGLVFRPAPTIGELRSGSPRLVELNDFLRHLHKKGLLEVLSFCETKVTPIVEGYGGWAFRMEIVPIESAYPGFGELVVLESTDHINSCKPLSRTDPSYTETLEFLQKLKSRYDTRIEIWMDITFFLYQNASDIIDNLNANIA* 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24209898 24216453 - CsaV3_4G034150.1 Csa04g02389 527999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02389 989 MobiDBLite consensus disorder prediction 673 692 - -
Csa04g02389 989 Gene3D alpha/beta hydrolase 698 884 IPR029058 -
Csa04g02389 989 MobiDBLite consensus disorder prediction 674 692 - -
Csa04g02389 989 SUPERFAMILY alpha/beta-Hydrolases 694 955 IPR029058 -
Csa04g02389 989 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 4 962 - -
Csa04g02389 989 SUPERFAMILY ARM repeat 134 596 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02389 K23504 SERAC1; protein SERAC1 - csv:101222471 1793.48
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g809 . Blo12g00948 . Bda03g00222 . Bpe04g00189 Bma04g00176 . . . . Cma09g00214 . . . Cpe06g00149 . . . . . . . . . . . . . . . . . . Cone20ag0175 Lsi04g01580 Csa04g02389 . . . . . . . . . . . . Cmo09g00207 . . . Car09g00182 . . Bhi09g03347 . . . . . . Cla05g02022 Cam05g2172 Cec05g2188 Cco05g2236 Clacu05g2165 Cmu05g2033 Cre05g2161 . . Chy07g00115 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005432 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02389 Csa_Chr04 FPKM 5.867647 5.383265 10.085804 10.385336 8.980446 7.956526 9.407822 8.220298 7.409547 7.920697