Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02396 ATGTCCACGAGGAGTGAACATCATACAGTCCCGCTTTCCGTGCTCCTGAAGCGTGAATTGGCGATTGAGAAGATTGAGAGACCGGAAATCGTACATGGTCAGGCGAGTCAGAGTAAGAAAGGCGAGGATTTTACATTACTAAAGACGGAATGCGAGAGAGTGGTCGGAGATGGAGTTTCAACCTATTCGGTTTTTGGGCTTTTTGATGGACATAATGGATCTGCAGCTGCTATTTATTCTAAGGAGAATTTATTGAACAATGTTTTAGCTGCTATTCCATCGGATCTCAACCGAGACGAATGGGTTGCAGCATTGCCAAGGGCCTTGGTTGCAGGTTTTGTGAAGACAGACAAAGATTTTCAAGCAAAAGCACAAACATCAGGAACCACAGTCACCTTCATGATCATTGAGGGATGGGTTCTCACTGTTGCCTCTGTTGGTGATTCCCGTTGCACTTTAGAATCATCTGAAGGTGGCATATACTACTTATCTGCAGATCATAGACTAGAAAGCAACGAAGAAGAGAGAGAACGTATAATTGCTAGTGGTGGTGAGGTGGGCCGGCTGAATACTGGTGGTGGTGCAGAGATTGGTCCGTTGAGATGCTGGCCTGGTGGCTTGTGTCTATCACGATCAATTGGTGATATGGATGTTGGCGAGTTTATAGTGCCTGTTCCCCACGTGAAGCAAGTTAAGCTATCTTCTACTGGTGGTAGGGTTATTATTTCAAGTGATGGTGTTTGGGATGCTTTATCAGCTGAAACGGCCTATGATTGTTGTCGGGGGATGCCAGTGGAAACTGCTGCCGCACAGATTGTGAAAGAAGCAGTTCAGTCAAAGGGACTTCGAGATGATACTACATGTATTGTGATTGACGTATTACCAAGGGAGAAACCATCTACTGCTTTGCCACCACCAAAGAAGCAGGTAAAAGGAATGTTTAAATCAATGTTCCGCAAAAGGTCTTCTGAATCATCTTCTCATTTTGAGAGGGAATATAATGAGCCAGATGTTGTCGAGGAATTATTTGAGGAAGGATCGGCTATGCTGTCAGAAAGGTTAGATTCCAAGTATCCAGTCTGCAACATGTTTAAGCTGTTTGTATGTGCAATATGCCAAATTGAGATCCAACCACGGGAGGGTGTCTCCATATATGCCGGCTCATCTAACCGAGGGAAATTGCGTGCTTGGGATGGACCTTTTCTATGCTCAAGTTGCACAGAGAAGAAAGAAGCTATGGAAGGAAAAAGATCATCTGGAGATAGACACAGCAGCGGAAGTGACTAG 1287 44.76 MSTRSEHHTVPLSVLLKRELAIEKIERPEIVHGQASQSKKGEDFTLLKTECERVVGDGVSTYSVFGLFDGHNGSAAAIYSKENLLNNVLAAIPSDLNRDEWVAALPRALVAGFVKTDKDFQAKAQTSGTTVTFMIIEGWVLTVASVGDSRCTLESSEGGIYYLSADHRLESNEEERERIIASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSSTGGRVIISSDGVWDALSAETAYDCCRGMPVETAAAQIVKEAVQSKGLRDDTTCIVIDVLPREKPSTALPPPKKQVKGMFKSMFRKRSSESSSHFEREYNEPDVVEELFEEGSAMLSERLDSKYPVCNMFKLFVCAICQIEIQPREGVSIYAGSSNRGKLRAWDGPFLCSSCTEKKEAMEGKRSSGDRHSSGSD* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24244336 24250658 + CsaV3_4G034220.1 Csa04g02396 528006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02396 428 ProSiteProfiles PPM-type phosphatase domain profile. 31 293 IPR001932 -
Csa04g02396 428 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 2 423 - -
Csa04g02396 428 CDD PP2Cc 39 293 IPR001932 -
Csa04g02396 428 MobiDBLite consensus disorder prediction 409 428 - -
Csa04g02396 428 Pfam Protein phosphatase 2C 52 278 IPR001932 -
Csa04g02396 428 SMART PP2C_4 17 291 IPR001932 -
Csa04g02396 428 PANTHER ALPHABET, ISOFORM E-RELATED 2 423 - -
Csa04g02396 428 SMART PP2C_SIG_2 46 293 IPR001932 -
Csa04g02396 428 Gene3D - 31 301 IPR036457 -
Csa04g02396 428 SUPERFAMILY PP2C-like 38 293 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02396 Csa-Chr4:24244336 Csa05g02632 Csa-Chr5:27433334 1.66E-174 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02396 - - csv:101211986 813.527