Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02408 ATGGAATTGTTGCCTCCAAATTTGGACAGTCTCAACCCTAGAGAAACTCGTGCTGACTCACTTGTTTCTGAATTCGTCAAGGACCAGTCTACCGAGTTTTCCCGCCCGATTGAATCTTCTAGCCGGGGCACTCATATGACGGATTCTGTACCTTCTGATTGGACCGACGAGAAGCACCATTTGTTTCTTGAATCCATGGAAGCATCATTTGTCAGCCAAATGTTTGATTCTGGGCATTCTGTTGGCTCCTGCCCCACCAAGGATAATTCTTCACGCACAAAATTGCTCAGCAAAAGCCAGTCCGCCTCTCACGGCCATTCACAGTTTGGCCAGTTTAAGGTTCTTCGACGAGGCAGCTGGAAGAACATTAATTTTGAACCAACTGAATCTCGATCAAATTTTTTGAATGAATACCAAGCTCTCTCACATAATCCTTGGATACATCACTTTAGAGCTGCTCGTAAAAACAAAAATGTCGTTTGCAAAAGTCAAGCTATCGGTTCAAGAGGAAGAAACTCGCTGTCATTAGGAGCAGCTAATAATTCAGGACCTATACGTGCTTCCGACTCTGATTTGTCCCAACAATATATCAGCAATAATAAAGAAGTTTCGGATCAGAACTTTGTTGATGAAGTTATAGAAGTTGAAAAGGGAAGCATTGATTGCAATGCCAAAAGGGCCAACGCATCAGAAACAAATGCTTTGATCAATGACCAGCCAGAAGATAGCTAG 732 42.9 MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHHLFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSWKNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAANNSGPIRASDSDLSQQYISNNKEVSDQNFVDEVIEVEKGSIDCNAKRANASETNALINDQPEDS* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24327516 24329951 - CsaV3_4G034340.1 Csa04g02408 528018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02408 243 MobiDBLite consensus disorder prediction 28 52 - -
Csa04g02408 243 MobiDBLite consensus disorder prediction 28 50 - -
Csa04g02408 243 MobiDBLite consensus disorder prediction 81 109 - -
Csa04g02408 243 PANTHER COLD REGULATED PROTEIN 27 23 239 IPR044678 GO:0009409|GO:0042752
Csa04g02408 243 PANTHER COLD REGULATED PROTEIN 27 23 239 - -
Csa04g02408 243 MobiDBLite consensus disorder prediction 81 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02408 - - - csv:101214397 482.256
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g763 . . . . . . . . . . Cma01g01838 . Car01g01432 . . . . . . . . . . . . . . . . . . . . . . Lsi04g01562 Csa04g02408 . . Blo17g00858 . Bda08g01355 . . . Bma01g00683 . . Cmo01g01897 Cmo09g00221 . . . . . Cpe02g00181 Bhi09g03326 . . . . . . Cla05g02040 Cam05g2190 Cec05g2208 Cco05g2253 Clacu05g2184 Cmu05g2050 Cre05g2179 . . Chy07g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005101 2 4 0 1 0 1 2 1 1 1 0 1 1 1 0 2 1 0 0 1 1 1 1 1 1 1 1 4 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02408 Csa_Chr04 FPKM 1.748867 0.0 2.401689 1.855021 26.795712 22.819046 30.856394 0.0 0.0 0.0