Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02414 ATGGTTTTGATTGAAAATGAATTTAGTAAAAATTATGTGATATTGAAGCCAGAAAATGCTAATTTATTGGATTTGTTTCTGTTCTTACTTCCATTTGGATTAAGAAAGAAAAAATTCATTGATTGTCCATATGGCAAAGAAGATTATTTCACAAACTTCACAGACCGATGGCTAATTGTCGTCTCCATGTTGCTTCAGTTCATCCTATCCCTCATTGCCACTCCTCTTGCAAAATTAGACGCATTTCTTCTTAAACTCTTCAACTTTATTTCTTTCAACGGCGGCTTCTTGGGGATTCTCTCCAAAATTCTCAGAGGAAAGGGTTTTGTGAAGGTTAATGAAGATTCGGCTGAGTACACATCGGTGGTGGGATTTGCAGATTGGAGAAGAGATTTGGATTCGTCAATAAAACCTGAACAGAGTTTCAGATATTACAGTGCTTTAACTGCAATGGCTACCAAAATCTCTTATGAATCCAAACCATTTGTCCAATCCGTTGTAAATGATCGTTGGAAGATGAAGTTGCTGGGTTACTTCAACTTTTGGAATGATTTTCAAGGTAGAACTACGACTCAGGCGTTTATGTTTAAGAACACGGCCATAGATCCGAATGTAACAATTGTTGCATTTAGAGGCACCTCCCCACTTGACGCATACGATTGGCAAGTGGATTTTGATTTCTCTTGGTACGAAATCGAGGATGTCGGCCTGATCCACAGTGGGTTCATGAAAGCCCTAGGGCTTCAGAAGGCAACAGGATGGCCAAAGGAGCTTCCCAAAACTCAAACACATGAGTTCGCATATTACACCCTCAGGAAACAACTAAGAGACATTGCCAAAGCCAACGAGAAGGCAAGGTTCATATTCACTGGCCACAGTTTAGGTGGAGCTTTGGCCACATTATTTGTCACTGTGTTGTGCCTACATGATGAGTCAACCATTTTGGAGAAATTGGATAGCGTTTACACATATGGGCAACCAAGAGTTGGTGACCAACAATTTGCAAAGTTCATGCTTAATTGTATCCAAAAATATGGGTTCAAGTATCATAGATATGTTTACTCTTATGACTTGGTGCCCAGAGTTCCTTCTGATGCCGTCCTTTTCAAATATAAACACTTCGGTAGATGTGTCTACTTCAACAGCCTTTACAAAGGAAGGATTGTGAAAGAGCAACCAAACAAGAACTACTTCTCGTTGCTATGGGTGATACCCAAATATTTAAGTGCATGGTGGGAGCTAATTAGGAGTTTCATAATCCCATTTGTGAAGGGTTTTGATTACTACGAGAGTTTGTTAATGAAGGGTGCAAGATTGGTTGGACTCGTGATTCCAGGACTTACTGCTCATTTTCCTTTGAACTATGTTAATGTCACTCGTTTGGGTAAGTTAAATGTACCCGACGAGGTCGAAGATCCCATTCTTCGATACGAAATTGAAGACGACTACTAA 1452 39.88 MVLIENEFSKNYVILKPENANLLDLFLFLLPFGLRKKKFIDCPYGKEDYFTNFTDRWLIVVSMLLQFILSLIATPLAKLDAFLLKLFNFISFNGGFLGILSKILRGKGFVKVNEDSAEYTSVVGFADWRRDLDSSIKPEQSFRYYSALTAMATKISYESKPFVQSVVNDRWKMKLLGYFNFWNDFQGRTTTQAFMFKNTAIDPNVTIVAFRGTSPLDAYDWQVDFDFSWYEIEDVGLIHSGFMKALGLQKATGWPKELPKTQTHEFAYYTLRKQLRDIAKANEKARFIFTGHSLGGALATLFVTVLCLHDESTILEKLDSVYTYGQPRVGDQQFAKFMLNCIQKYGFKYHRYVYSYDLVPRVPSDAVLFKYKHFGRCVYFNSLYKGRIVKEQPNKNYFSLLWVIPKYLSAWWELIRSFIIPFVKGFDYYESLLMKGARLVGLVIPGLTAHFPLNYVNVTRLGKLNVPDEVEDPILRYEIEDDY* 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24366537 24370044 - CsaV3_4G034400.1 Csa04g02414 528024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02414 483 SUPERFAMILY alpha/beta-Hydrolases 150 397 IPR029058 -
Csa04g02414 483 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 5 467 - -
Csa04g02414 483 Pfam Lipase (class 3) 207 365 IPR002921 GO:0006629
Csa04g02414 483 Gene3D alpha/beta hydrolase 133 406 IPR029058 -
Csa04g02414 483 CDD Lipase_3 142 389 - -
Csa04g02414 483 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 5 467 IPR044819 GO:0004806|GO:0006629
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02414 - - - csv:101203640 964.911
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02414 Csa-Chr4:24366537 Csa06g02943 Csa-Chr6:25491030 5.36E-151 dispersed
Csa04g02413 Csa-Chr4:24361375 Csa04g02414 Csa-Chr4:24366537 0 tandem
Csa04g02414 Csa-Chr4:24366537 Csa04g02415 Csa-Chr4:24374269 3.82E-158 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g755 . . . . . . . . . . Cma01g01835 Cma09g00234 . . . Cpe06g00163 . . . . . . . . . . . . . . . . Cone7ag1369 . . Lsi04g01552 Csa04g02414 . . . . . . . . . . Sed01g2671 Cmo01g01895 Cmo09g00228 . . . . . Cpe02g00184 Bhi09g03313 Tan01g4775 Cmetu07g1301 . . Mch11g0294 . Cla05g02045 Cam05g2196 Cec05g2214 Cco05g2259 Clacu05g2190 Cmu05g2056 Cre05g2185 . . Chy07g00138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002909 0 2 0 1 0 2 0 2 2 2 1 2 3 3 2 4 2 1 3 2 2 1 2 4 3 2 1 1 5 0 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02414 Csa_Chr04 FPKM 11.631524 11.855193 7.113874 8.780146 5.257255 3.443732 4.597801 40.557804 38.772175 41.2757