Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02418 ATGGAAAATGATGATTTAAAATCGGAAGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTACAATGATTTCTCACCGCCATCCTCTGATTTCAGCTCAACTACCACCGATCACCCACATTGCCATTTGGATTCCTCTTCATCGCCTCCATTATTCATCAACAACAACAGTAACAACAACAGCAACAACCCACCTTATAATTTCCCCCAACAATCTACTGTTCCATTCCCAGGAACCTCCAGTTCACGGTGGCGAAACTCCGGTAGTTGTGAAACAGAGAGTTTGCAGAAACAGAGGTCGGTAGCGGCTATGAGGGAGATGATATTCAGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCGGTGAAGCCACCAAAAAGAAGAAACGTGAAGATTTCAACTGACCCACAAAGTGTAGCGGCTCGACATAGGAGAGAAAGAATTAGCGAGAGAATTAGAATACTTCAAAGATTAGTCCCTGGAGGTACTAAAATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTATGTTAAATTCTTAAAAACCCAAGTTCAGTCTCTTGAAAGAGCCGCCGTTTCCGCTGGGAACCGCCCAATCACCGGTGTTGGTGCACCCAGTAGCGTTGGGTTCCCTTTGGAAATGTCAACGGGAAGTTACATCCCTAATCATCATCAATCCCAACCTTGA 717 43.38 MENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSTTTDHPHCHLDSSSSPPLFINNNSNNNSNNPPYNFPQQSTVPFPGTSSSRWRNSGSCETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAVSAGNRPITGVGAPSSVGFPLEMSTGSYIPNHHQSQP* 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24394485 24395550 - CsaV3_4G034440.1 Csa04g02418 528028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02418 238 Pfam Helix-loop-helix DNA-binding domain 151 190 IPR011598 GO:0046983
Csa04g02418 238 CDD bHLH_AtIND_like 142 198 - -
Csa04g02418 238 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 235 IPR045843 GO:0003700|GO:0006355
Csa04g02418 238 MobiDBLite consensus disorder prediction 32 103 - -
Csa04g02418 238 SMART finulus 147 196 IPR011598 GO:0046983
Csa04g02418 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 200 IPR036638 GO:0046983
Csa04g02418 238 MobiDBLite consensus disorder prediction 27 103 - -
Csa04g02418 238 Gene3D - 144 207 IPR036638 GO:0046983
Csa04g02418 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
Csa04g02418 238 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 235 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01941 Csa04g02418 CCT
Csa02g01941 Csa04g02418 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02418 Csa-Chr4:24394485 Csa07g02411 Csa-Chr7:22142359 3.65E-32 dispersed
Csa02g01465 Csa-Chr2:14091802 Csa04g02418 Csa-Chr4:24394485 1.35E-45 transposed
Csa06g02787 Csa-Chr6:24304724 Csa04g02418 Csa-Chr4:24394485 2.01E-35 transposed
Csa02g01941 Csa-Chr2:18201502 Csa04g02418 Csa-Chr4:24394485 2.81E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31616 PF00010 HLH 1.60E-06 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02418 - - csv:101204124 402.519