Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02422 ATGGCTCTTCCTCAGAATCACTACCAACAACACTATCAATCTCAACACCAACAGCCACACCAATCTATATCTTTTCGCAACTTGTACACTCCCGATGGTCATGTTTCTCAACCGATCTCCTATTTCAACTCCTTTACTTTGCAGGATCATTCCCAGCATCCTCCCTACGTTCCTCCATGTACAGCCCCTGGTCAGGATGCTAGTGATGGAGTAGCAGATTTACACTGGATGTATGGCATTGAACCCAAGAAGAAGAGATTGAAAGAGCAAGATCTTTTTGAGAATAATTCCCAAATATCATCCATTGATTTCTTGCAGCAACGTCCAGTTTCTACAGGATTGGGTTTATCTCTTGACAACACTCGTATGGCTTCGACGGGAGACTCTCCTTTGGTTTCTCTTGTAGGTGATGACATCGATCGTGAATTGCAGCAACAGGACGAAGAAATTGAGAAGTTCCTTAAAGTTCAGGGTGATCGGCTACGGCATTCCATATTAGAGAAGATCCAAGCAAATCAACTCCAAACTCTCTCGATTGTAGAGGAAAAAATTATTAAAAAGCTACGTGAAAAAGAAGCTGAGGTGGAGTGTATCAACAAGAAAAACATTGAGCTAGAACAGCGAATGGAGCAGCTTTCAGTGGAAGCTGGTGCTTGGCAGCAGCGCGCTAGGTATAACGAGAACATGATCACAGCCCTGAAGTTCAATCTTCAGCAGGTGTATGCTCAAAGCAGGGATAGCAAGGAGGGATGTGGGGACAGTGAGGTTGAAGACACTGCATCGTGCTGCAATGGTCGGACGCTTGATTTTCAACTGCTTTGTAGCAACAGCAATGATGTGAAGGAGTTGATGTACTGTAAGGCTTGCAGGGTTAATGAAGTGTGCATGCTTTTGTTCCCTTGTAAGCATCTCTGCCTGTGCAAGGATTGCGAAAGTAGGCTTACATTTTGCCCTGTGTGTCAATCGTCGAAATTTGTAGGGATGGAAGTTTATATGTAA 999 44.04 MALPQNHYQQHYQSQHQQPHQSISFRNLYTPDGHVSQPISYFNSFTLQDHSQHPPYVPPCTAPGQDASDGVADLHWMYGIEPKKKRLKEQDLFENNSQISSIDFLQQRPVSTGLGLSLDNTRMASTGDSPLVSLVGDDIDRELQQQDEEIEKFLKVQGDRLRHSILEKIQANQLQTLSIVEEKIIKKLREKEAEVECINKKNIELEQRMEQLSVEAGAWQQRARYNENMITALKFNLQQVYAQSRDSKEGCGDSEVEDTASCCNGRTLDFQLLCSNSNDVKELMYCKACRVNEVCMLLFPCKHLCLCKDCESRLTFCPVCQSSKFVGMEVYM* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24430215 24433386 + CsaV3_4G034480.1 Csa04g02422 528032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02422 332 ProSiteProfiles Zinc finger RING-type profile. 286 321 IPR001841 -
Csa04g02422 332 PANTHER F2G19.2 1 332 - -
Csa04g02422 332 PIRSF SBP1_RNase_bind 9 332 IPR017066 -
Csa04g02422 332 MobiDBLite consensus disorder prediction 1 21 - -
Csa04g02422 332 Pfam Zinc finger, C3HC4 type (RING finger) 285 322 - -
Csa04g02422 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 331 IPR013083 -
Csa04g02422 332 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 332 IPR017066 -
Csa04g02422 332 Coils Coil 181 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02422 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - csv:101215751 654.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01395 Csa-Chr2:13348359 Csa04g02422 Csa-Chr4:24430215 6.09E-22 dispersed
Csa02g01752 Csa-Chr2:17124193 Csa04g02422 Csa-Chr4:24430215 1.60E-50 dispersed
Csa03g00211 Csa-Chr3:1705230 Csa04g02422 Csa-Chr4:24430215 8.12E-37 dispersed
Csa04g02422 Csa-Chr4:24430215 Csa07g01181 Csa-Chr7:11583959 2.84E-27 dispersed
Csa04g02422 Csa-Chr4:24430215 Csa03g04659 Csa-Chr3:40483387 1.30E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g751 Blo01g01524 Blo12g00960 Bda01g00572 . Bpe02g00433 . Bma04g00159 Bma01g02268 . . Cma01g01830 Cma09g00242 Car01g01428 . . Cpe06g00167 . . . . . . . . . . . . . . . Cone4ag1584 Cone7ag1365 Cone17ag0847 Cone20ag0195 Lsi04g01547 Csa04g02422 . . Blo17g00879 . . . . Bpe05g00027 . . Sed01g2676 Cmo01g01889 Cmo09g00236 . . . Car09g00202 . Cpe02g00188 Bhi09g03306 Tan01g4760 Cmetu07g0261 . Hepe01g1776 Mch11g0302 . Cla05g02053 Cam05g2206 Cec05g2222 Cco05g2265 Clacu05g2198 Cmu05g2064 Cre05g2190 . . Chy07g00143 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004711 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02422 Csa_Chr04 FPKM 33.33461 37.445618 40.254307 38.670444 39.642097 43.457867 39.788692 54.857159 52.632778 50.276516