Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02431 ATGCTTCTTCTTAACAATAACATGGCTGTCGAGCTCCTCGTCGGATTTGGTGATGCTACACCTTCTAATCATTTCACCCCCAACATGGAAGAAAATGCTGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAAAGCGTCCAGAATTTCCTCCGATTGATGTCTCATACAACTAATCACCAACACTCCCAACATGATTCTTCTACTTCCTCTACTCCCAATAATGGATATCAAGCCGTCGCAGATTCCGTCGTTAATAAATTCAAGAAGGTTATTTCTTTGCTTGACCGCAACAGAACCGGCCATGCTCGTTTCAGAAGGGCTCCGGTTCTTACAACTACTACTACTACTACTACTCCGCCTCCTCCTCCTCCGCCAAAGGTCAAGCCCCAGCATCAAGATCCGAGTTCGTCGTCTCCGATTTCGGTACCTCCGGTTCAAGTAAAGAAACAAGAATCAGTTTCTGCTTTTAAGGTTTATTGTCCAACGCCTTCCTCCGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACCCTCATCAGCCTTCTCATCCATCCAATACCTTTCAAGCCCAGCAAAATACTTCGTCGGTGGTACTCAAAAATGGGTCTGTAGATAGAAAAGATGCGACTACCACCATCAATTTTGCAGCCTCGCCCCCAATCTCCGCTGCAAATTCGTATATTTCATCGTTAACTGGAGACACCGAAAGTTTACAGCCATCTCTGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCTGCCGGAAAGCCCCCTCTTTCATCCTCTTCGTTAAAGAGAAAATGTAATTCCATGGAGGATTCCGCCATGAAGTGTGGCTCATCATCCGGTCGGTGTCACTGTTCCAAGAAGAGCAGGAAAAACAGGATAAAAAGAGTCATCAGAGTTCCGGCCGTTAGCTCAAAACTTGCGGATATCCCACCAGATGATTACTCCTGGAGAAAGTATGGGCAAAAACCCATCAAAGGATCTCCTCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGATGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAGAACGATCACAATCACGCCCACTCCACCGAAACACCTGCACCGCTTGTTCTCGAATCATCATAA 1176 46.85 MLLLNNNMAVELLVGFGDATPSNHFTPNMEENAAVSAVQEAASAGIQSVQNFLRLMSHTTNHQHSQHDSSTSSTPNNGYQAVADSVVNKFKKVISLLDRNRTGHARFRRAPVLTTTTTTTTPPPPPPPKVKPQHQDPSSSSPISVPPVQVKKQESVSAFKVYCPTPSSVVRLPPLPHNNPHQPSHPSNTFQAQQNTSSVVLKNGSVDRKDATTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMEDSAMKCGSSSGRCHCSKKSRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAPLVLESS* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24478962 24480541 + CsaV3_4G034570.1 Csa04g02431 528041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02431 391 Gene3D WRKY domain 305 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa04g02431 391 ProSiteProfiles WRKY domain profile. 313 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa04g02431 391 MobiDBLite consensus disorder prediction 118 133 - -
Csa04g02431 391 MobiDBLite consensus disorder prediction 134 149 - -
Csa04g02431 391 MobiDBLite consensus disorder prediction 59 79 - -
Csa04g02431 391 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 30 391 IPR044810 GO:0003700
Csa04g02431 391 Pfam WRKY DNA -binding domain 320 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa04g02431 391 Pfam Plant zinc cluster domain 270 316 IPR018872 -
Csa04g02431 391 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 30 391 - -
Csa04g02431 391 MobiDBLite consensus disorder prediction 105 149 - -
Csa04g02431 391 SUPERFAMILY WRKY DNA-binding domain 316 377 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa04g02431 391 SMART WRKY_cls 318 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02744 Csa-Chr2:23904722 Csa04g02431 Csa-Chr4:24478962 5.45E-14 dispersed
Csa04g02431 Csa-Chr4:24478962 Csa07g00476 Csa-Chr7:3456072 2.40E-28 dispersed
Csa05g00908 Csa-Chr5:7039039 Csa04g02431 Csa-Chr4:24478962 1.04E-08 dispersed
Csa02g01149 Csa-Chr2:11212968 Csa04g02431 Csa-Chr4:24478962 1.52E-56 transposed
Csa03g04408 Csa-Chr3:38433423 Csa04g02431 Csa-Chr4:24478962 1.72E-72 transposed
Csa07g01660 Csa-Chr7:17076064 Csa04g02431 Csa-Chr4:24478962 3.24E-59 transposed
Csa04g02431 Csa-Chr4:24478962 Csa06g02959 Csa-Chr6:25618485 1.24E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31619 PF03106 WRKY 4.00E-25 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02431 - - csv:101216652 668.307