Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02437 ATGAATAACACGAATTTCGTCTCTAATCCTATGCTTCCTCTCCCATTACTACCTTCTTCATCTCAGTTGCTGTTTTCGAATAACCCCATTCATTTCAAGCACAGGGTCTCCGTTGTTGTAAAACCCACTTTTCAGGCTTCCTTTAGATGGAGGATCCGAGCCACTGCCGAAAACGGAGCTTCATCGGCGTCGACTTCGCAGATCGATATGGTGAGGAACAGGGAGGGGATTTTCACCGCCAAACAAAGCAAGGTTGTTGTCCTTTGGGACCTTGACAACAAACCCCCTCGTGGGCCTCCGTATGAGGCGGCTATGGCGCTGAAACGAGTGGCGCAACGCTTCGGCCAAGTGGTCGACATGTCGGCTTACGCTAATCGTCATGCCTTCATCCATTTGCCGCAGTGGGTTGTTGAAGAACGCCGCGAGCGTCGGCAATTGGACATTCTTGAGCGCAAAGGGTTGTTCACGCCGTCCGAATCATACGTCTGCGGGGTTTGCGGTCGAAAGTGCAAAACAAACCTAGACCTTAAGAAGCATTTCAAGCAACTTCACGAACGAGAGCGCCAGAAGAAATTGAACAGAATGAGGTCTCTCAAGGGCAAGAAGCGACAGCGTTATAAGGAAAGGTTCGTATCTGGAAACCATAAGTACAATGAAGCAGCGAGGTCTGTGATCACCCCCAAAGTTGGATATGGGTTGGCCTCAGAATTGAGACGTGCTGGATTTTTTGTAAAAACAGTAGAGGATAAGCCTCAGGCAGCTGATTGGGCCTTGAAGAAACAGATGCAACACTCGATGAGTCGTGGTATTGATTGGATGTTTCTTGTTTCTGATGATTCAGATTTCTCAGAGATGTTAAGGAAGGCTAAGGAGGCTAATTTGGGAACTGTGGTGGTGGGAGATCGTGATAGGGCATTGGGTAGGCACGCAGATTTATGGGTTCCATGGATGGGGGTTGAAAATGGGGATGTTACAGAGGAGGATTTGGTGCCCAAAAAATGGAGGATGAGGAGAAGAGACAAGGAAGTGGATGAAGGTGATGATGGCTTTTCAGTTTCTAGTTTCTATGGAGACATTGCTGGTAGTGATTTGGAGAGTGTAGTGGAAGAGCTTGCTTCCACAAGTACAGAGTTCAATGGGTTAAGAATTTCTGCATTTTCAGAGGGAGAAGATGATGAAGAAGAAGACGATGATTGGGTTGAAGAGGATGTTGCACCTGACTATCTGCTAGTGATGAGTGACGAGGAAGATGGGTATTTTTGA 1263 47.35 MNNTNFVSNPMLPLPLLPSSSQLLFSNNPIHFKHRVSVVVKPTFQASFRWRIRATAENGASSASTSQIDMVRNREGIFTAKQSKVVVLWDLDNKPPRGPPYEAAMALKRVAQRFGQVVDMSAYANRHAFIHLPQWVVEERRERRQLDILERKGLFTPSESYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKERFVSGNHKYNEAARSVITPKVGYGLASELRRAGFFVKTVEDKPQAADWALKKQMQHSMSRGIDWMFLVSDDSDFSEMLRKAKEANLGTVVVGDRDRALGRHADLWVPWMGVENGDVTEEDLVPKKWRMRRRDKEVDEGDDGFSVSSFYGDIAGSDLESVVEELASTSTEFNGLRISAFSEGEDDEEEDDDWVEEDVAPDYLLVMSDEEDGYF* 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24511370 24514310 + CsaV3_4G034630.1 Csa04g02437 528047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02437 420 PANTHER OS06G0166200 PROTEIN 49 390 - -
Csa04g02437 420 CDD PIN_LabA-like 171 301 - -
Csa04g02437 420 PANTHER - 49 390 - -
Csa04g02437 420 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 189 IPR013087 -
Csa04g02437 420 Gene3D - 159 317 - -
Csa04g02437 420 Coils Coil 181 201 - -
Csa04g02437 420 ProSitePatterns Zinc finger C2H2 type domain signature. 163 184 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00314 Csa-Chr3:2653115 Csa04g02437 Csa-Chr4:24511370 5.93E-73 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31620 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02437 - - csv:101206044 792.727