Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02438 ATGGAAGGAGAAGTTTGCTCTGTAAATTCATCCTCCCCAAAGAGGAAGCAACGGCACGATCAGAATCATCTCCAACAACAAAAGCCTTACAGAGGAATACGTATGAGGAAGTGGGGAAAGTGGGTTGCGGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGTTCATACACAACCCCCGTCGCCGCCGCTAGAGCTTACGACACCGCTGTCTTCTATCTCCGTGGACCCACCGCTCGACTTAACTTCCCAGATTTGATGTTCGAAACCGATCAGCTTCACGACATGTCGGCCGCCTCCATACGCAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAGACCTCTCTCCACGCCTCTAATTCCGCCGGTACTCAAATTTCCGATAAGCCCGATTTAAACGAATACCCCAACCCTGAAACCTCAGACGACGATTAA 450 51.56 MEGEVCSVNSSSPKRKQRHDQNHLQQQKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPDLMFETDQLHDMSAASIRKRATEVGARVDAIQTSLHASNSAGTQISDKPDLNEYPNPETSDDD* 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24520725 24523201 + CsaV3_4G034640.1 Csa04g02438 528048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02438 149 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 147 - -
Csa04g02438 149 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Csa04g02438 149 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Csa04g02438 149 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Csa04g02438 149 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Csa04g02438 149 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Csa04g02438 149 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Csa04g02438 149 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 147 - -
Csa04g02438 149 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Csa04g02438 149 MobiDBLite consensus disorder prediction 121 149 - -
Csa04g02438 149 MobiDBLite consensus disorder prediction 121 136 - -
Csa04g02438 149 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Csa04g02438 149 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01422 Csa-Chr2:13655334 Csa04g02438 Csa-Chr4:24520725 4.12E-52 dispersed
Csa02g02493 Csa-Chr2:21981071 Csa04g02438 Csa-Chr4:24520725 6.44E-24 dispersed
Csa04g02438 Csa-Chr4:24520725 Csa06g02954 Csa-Chr6:25584512 2.03E-51 dispersed
Csa04g02593 Csa-Chr4:25447439 Csa04g02438 Csa-Chr4:24520725 2.45E-26 transposed
Csa06g00363 Csa-Chr6:2956251 Csa04g02438 Csa-Chr4:24520725 1.85E-27 transposed
Csa06g01994 Csa-Chr6:17955495 Csa04g02438 Csa-Chr4:24520725 2.39E-27 transposed
Csa02g01930 Csa-Chr2:18124218 Csa04g02438 Csa-Chr4:24520725 3.06E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31621 PF00847 AP2 2.20E-11 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02438 K09286 - csv:101219005 307.76