Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02438 | ATGGAAGGAGAAGTTTGCTCTGTAAATTCATCCTCCCCAAAGAGGAAGCAACGGCACGATCAGAATCATCTCCAACAACAAAAGCCTTACAGAGGAATACGTATGAGGAAGTGGGGAAAGTGGGTTGCGGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGTTCATACACAACCCCCGTCGCCGCCGCTAGAGCTTACGACACCGCTGTCTTCTATCTCCGTGGACCCACCGCTCGACTTAACTTCCCAGATTTGATGTTCGAAACCGATCAGCTTCACGACATGTCGGCCGCCTCCATACGCAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAGACCTCTCTCCACGCCTCTAATTCCGCCGGTACTCAAATTTCCGATAAGCCCGATTTAAACGAATACCCCAACCCTGAAACCTCAGACGACGATTAA | 450 | 51.56 | MEGEVCSVNSSSPKRKQRHDQNHLQQQKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPDLMFETDQLHDMSAASIRKRATEVGARVDAIQTSLHASNSAGTQISDKPDLNEYPNPETSDDD* | 150 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24520725 | 24523201 | + | CsaV3_4G034640.1 | Csa04g02438 | 528048 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02438 | 149 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 9 | 147 | - | - | |
Csa04g02438 | 149 | Gene3D | AP2/ERF domain | 28 | 87 | IPR036955 | GO:0003700|GO:0006355 | |
Csa04g02438 | 149 | CDD | AP2 | 30 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g02438 | 149 | SUPERFAMILY | DNA-binding domain | 29 | 87 | IPR016177 | GO:0003677 | |
Csa04g02438 | 149 | PRINTS | Ethylene responsive element binding protein signature | 30 | 41 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g02438 | 149 | PRINTS | Ethylene responsive element binding protein signature | 68 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g02438 | 149 | ProSiteProfiles | AP2/ERF domain profile. | 29 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g02438 | 149 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 9 | 147 | - | - | |
Csa04g02438 | 149 | Pfam | AP2 domain | 30 | 78 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g02438 | 149 | MobiDBLite | consensus disorder prediction | 121 | 149 | - | - | |
Csa04g02438 | 149 | MobiDBLite | consensus disorder prediction | 121 | 136 | - | - | |
Csa04g02438 | 149 | SMART | rav1_2 | 29 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Csa04g02438 | 149 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01422 | Csa-Chr2:13655334 | Csa04g02438 | Csa-Chr4:24520725 | 4.12E-52 | dispersed | |
Csa02g02493 | Csa-Chr2:21981071 | Csa04g02438 | Csa-Chr4:24520725 | 6.44E-24 | dispersed | |
Csa04g02438 | Csa-Chr4:24520725 | Csa06g02954 | Csa-Chr6:25584512 | 2.03E-51 | dispersed | |
Csa04g02593 | Csa-Chr4:25447439 | Csa04g02438 | Csa-Chr4:24520725 | 2.45E-26 | transposed | |
Csa06g00363 | Csa-Chr6:2956251 | Csa04g02438 | Csa-Chr4:24520725 | 1.85E-27 | transposed | |
Csa06g01994 | Csa-Chr6:17955495 | Csa04g02438 | Csa-Chr4:24520725 | 2.39E-27 | transposed | |
Csa02g01930 | Csa-Chr2:18124218 | Csa04g02438 | Csa-Chr4:24520725 | 3.06E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31621 | PF00847 | AP2 | 2.20E-11 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02438 | K09286 | - | csv:101219005 | 307.76 |