Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02444 ATGGCTGCTTCTTTTCTTTTCAGAGGTCATCCGCTCCTGCGGTTAGGGCTTAAGCGCCGGGGGCAGTGTACTGGGATTGTGCAAGTGACTTGCCGGTTTTGCTGCAGTGCGACTGCGGCGTCTACTCCATCGGACGGCGACTTAACAGCTGGTGATAATGCTACCTCAGTGGTGAGTGTCAGTGAGCCACCAAAGTACCTAAGATGGGACGAGCCTGATTATCGAAAGTGGAAGAACCAGGAGGAGGAAATTCTTGGCGATATTGAGCCTATCATATTCCTCACTAAAGAGATCCTCCACTCCCATAGGTATGCGGATGGGGAGCGACTGACATTGGAGGATGAGAGAACTGTGGTAGACAGACTTCTGGCACATCATCCACATGCTGAAGATAAAATTGGATGTGGACTTGAATCCATCATGGTTGATCGGCATCCCCAATTTCGGCAATCAAGATGCTTCTTTGTTATAAGGACCGATGGTGGATGGATTGACTTCTCATATCAAAAATGTCTTCGGGCATATATCCGAAATAAATACCCATCGTTTGCAGAGCGGTTTATTCGCGAGCATTTCAAACGTGGTAGTTGA 591 48.05 MAASFLFRGHPLLRLGLKRRGQCTGIVQVTCRFCCSATAASTPSDGDLTAGDNATSVVSVSEPPKYLRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVDRLLAHHPHAEDKIGCGLESIMVDRHPQFRQSRCFFVIRTDGGWIDFSYQKCLRAYIRNKYPSFAERFIREHFKRGS* 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24549015 24553703 + CsaV3_4G034700.1 Csa04g02444 528054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02444 196 PANTHER DCL PROTEIN (DUF3223) 1 195 - -
Csa04g02444 196 PANTHER - 1 195 IPR044673 -
Csa04g02444 196 Gene3D - 90 178 - -
Csa04g02444 196 Pfam Protein of unknown function (DUF3223) 96 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02444 - - - csv:101218776 412.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00233 Csa-Chr1:1494695 Csa04g02444 Csa-Chr4:24549015 6.40E-09 dispersed
Csa04g02409 Csa-Chr4:24339392 Csa04g02444 Csa-Chr4:24549015 9.76E-38 dispersed
Csa04g02444 Csa-Chr4:24549015 Csa05g01630 Csa-Chr5:19349616 2.17E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g720 . . . . . . . . . . Cma01g01814 Cma09g00259 Car01g01416 . . Cpe06g00179 . . . . . . . . . . . . . . . Cone4ag1597 . . . Lsi04g01521 Csa04g02444 . . . . . . Bpe02g01790 . Bma01g00665 . Sed01g2690 Cmo01g01870 Cmo09g00252 . . . Car09g00218 . . Bhi09g03277 Tan01g4735 Cmetu07g1444 . Hepe01g1797 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001539 1 2 1 6 4 1 4 2 1 1 1 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 4 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02444 Csa_Chr04 FPKM 14.077497 14.8764 8.918543 8.450484 2.221577 2.789058 1.662138 6.523035 6.912618 5.955447