Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02445 | ATGGCCAAACCACATTGTTACCCATCTTTATCAATTTCAACTCACCACAACACTTCCCTTCTTCTTGATTCCCTCTATTGCTTCGAAGATGAGGTTGAAGATGGCCATTCCAATTCCCAACCGAAGTTCCAACCTTTCTCAATTAATCTTAACATCAATTCCCCAAACTCTGTTTTCTTGTCCGATTGGGAAGACGATGAATTGGTCTCTCTGTTTTCAAAAGAGAACGGAAATAAGCTTCACAACACTCTCCCACATAATCCTTCTCTAGCTGCAGCTCGTTCCAAGGCTGTTCACTGGATTCTCAAGGTCAATTCTCATTACTCTTTCTCTGCACACACCGCCGTTTTGGCCGTTGATTATGTCGATAGGTTTCTTTCCACCCCACATTTTCATATTGAGAAGCCATGGATGACCCATCTCACTGCCATTGCTTCTTTATCTCTCGCCGCTAAAGTGGAAGAAACCCAAGTCCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTTTTTCGAAGCTAAAACCATTACAAGAATGGAAATTCTTGTTCTCTCTACACTTGTTTGGAGAATGAATCCAGTGAACCCACTTTCCTTTCTGGATTATATTGTAAGACGTCTCGGCTTCAAAGACCAACTCTGCTCTCAACTCCTCTGTAAATGTGAACGATTACTTCTCTCTGTCATTATAGATTGTAGATTCGTATGTTTTCTCCCATCAGTATTAGCAACCGCTATTATTTTCCAAGTTATCAACGACATAGAACCCCATCTCGCCACAAAATACCACAATCAGCTCATGGGTTTTCTTCAAATCGACAAGGATAAAATGGAGGAATGCTCACGATTCATCTTAGAAGCTTCATGGAAAGGACAGAGAAAGGAATGGAAGAATAATAAACAAAGATTTGGGTTAGTCGACATGTCATGCAGCTCAAATGGTGGGAATAGGAATGTGGACACTATGGTATCGTCGCCGGAGACAGCATCTAAGAAGAGAAAAATTGATGAACAACATCCGTAG | 1029 | 41.5 | MAKPHCYPSLSISTHHNTSLLLDSLYCFEDEVEDGHSNSQPKFQPFSINLNINSPNSVFLSDWEDDELVSLFSKENGNKLHNTLPHNPSLAAARSKAVHWILKVNSHYSFSAHTAVLAVDYVDRFLSTPHFHIEKPWMTHLTAIASLSLAAKVEETQVPLLLDLQVEENEYFFEAKTITRMEILVLSTLVWRMNPVNPLSFLDYIVRRLGFKDQLCSQLLCKCERLLLSVIIDCRFVCFLPSVLATAIIFQVINDIEPHLATKYHNQLMGFLQIDKDKMEECSRFILEASWKGQRKEWKNNKQRFGLVDMSCSSNGGNRNVDTMVSSPETASKKRKIDEQHP* | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24557946 | 24559235 | + | CsaV3_4G034710.1 | Csa04g02445 | 528055 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02445 | 342 | MobiDBLite | consensus disorder prediction | 314 | 328 | - | - | |
Csa04g02445 | 342 | Gene3D | - | 195 | 283 | - | - | |
Csa04g02445 | 342 | ProSitePatterns | Cyclins signature. | 94 | 125 | IPR006671 | - | |
Csa04g02445 | 342 | PANTHER | CYCLIN D3.1 PROTEIN | 60 | 334 | - | - | |
Csa04g02445 | 342 | Pfam | Cyclin, C-terminal domain | 196 | 294 | IPR004367 | - | |
Csa04g02445 | 342 | Pfam | Cyclin, N-terminal domain | 92 | 194 | IPR006671 | - | |
Csa04g02445 | 342 | MobiDBLite | consensus disorder prediction | 314 | 342 | - | - | |
Csa04g02445 | 342 | SUPERFAMILY | Cyclin-like | 57 | 194 | IPR036915 | - | |
Csa04g02445 | 342 | Gene3D | - | 92 | 194 | - | - | |
Csa04g02445 | 342 | PANTHER | CYCLINS | 60 | 334 | IPR039361 | - | |
Csa04g02445 | 342 | CDD | CYCLIN | 94 | 186 | IPR013763 | - | |
Csa04g02445 | 342 | SUPERFAMILY | Cyclin-like | 197 | 293 | IPR036915 | - | |
Csa04g02445 | 342 | SMART | cyclin_7 | 99 | 187 | IPR013763 | - | |
Csa04g02445 | 342 | SMART | Cyclin_C_2 | 196 | 314 | IPR004367 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa02g01926 | Csa04g02445 | CCT | |
Csa02g01926 | Csa04g02445 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01827 | Csa-Chr3:14012615 | Csa04g02445 | Csa-Chr4:24557946 | 4.87E-84 | dispersed | |
Csa04g02445 | Csa-Chr4:24557946 | Csa06g03126 | Csa-Chr6:26701732 | 2.22E-42 | dispersed | |
Csa02g01926 | Csa-Chr2:18094023 | Csa04g02445 | Csa-Chr4:24557946 | 3.85E-107 | wgd | |
Csa04g02445 | Csa-Chr4:24557946 | Csa06g02966 | Csa-Chr6:25660299 | 1.06E-75 | wgd | |
Csa04g02445 | Csa-Chr4:24557946 | Csa07g00732 | Csa-Chr7:5194238 | 1.11E-69 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02445 | K14505 | - | csv:101218302 | 699.893 |