Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02445 ATGGCCAAACCACATTGTTACCCATCTTTATCAATTTCAACTCACCACAACACTTCCCTTCTTCTTGATTCCCTCTATTGCTTCGAAGATGAGGTTGAAGATGGCCATTCCAATTCCCAACCGAAGTTCCAACCTTTCTCAATTAATCTTAACATCAATTCCCCAAACTCTGTTTTCTTGTCCGATTGGGAAGACGATGAATTGGTCTCTCTGTTTTCAAAAGAGAACGGAAATAAGCTTCACAACACTCTCCCACATAATCCTTCTCTAGCTGCAGCTCGTTCCAAGGCTGTTCACTGGATTCTCAAGGTCAATTCTCATTACTCTTTCTCTGCACACACCGCCGTTTTGGCCGTTGATTATGTCGATAGGTTTCTTTCCACCCCACATTTTCATATTGAGAAGCCATGGATGACCCATCTCACTGCCATTGCTTCTTTATCTCTCGCCGCTAAAGTGGAAGAAACCCAAGTCCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTTTTTCGAAGCTAAAACCATTACAAGAATGGAAATTCTTGTTCTCTCTACACTTGTTTGGAGAATGAATCCAGTGAACCCACTTTCCTTTCTGGATTATATTGTAAGACGTCTCGGCTTCAAAGACCAACTCTGCTCTCAACTCCTCTGTAAATGTGAACGATTACTTCTCTCTGTCATTATAGATTGTAGATTCGTATGTTTTCTCCCATCAGTATTAGCAACCGCTATTATTTTCCAAGTTATCAACGACATAGAACCCCATCTCGCCACAAAATACCACAATCAGCTCATGGGTTTTCTTCAAATCGACAAGGATAAAATGGAGGAATGCTCACGATTCATCTTAGAAGCTTCATGGAAAGGACAGAGAAAGGAATGGAAGAATAATAAACAAAGATTTGGGTTAGTCGACATGTCATGCAGCTCAAATGGTGGGAATAGGAATGTGGACACTATGGTATCGTCGCCGGAGACAGCATCTAAGAAGAGAAAAATTGATGAACAACATCCGTAG 1029 41.5 MAKPHCYPSLSISTHHNTSLLLDSLYCFEDEVEDGHSNSQPKFQPFSINLNINSPNSVFLSDWEDDELVSLFSKENGNKLHNTLPHNPSLAAARSKAVHWILKVNSHYSFSAHTAVLAVDYVDRFLSTPHFHIEKPWMTHLTAIASLSLAAKVEETQVPLLLDLQVEENEYFFEAKTITRMEILVLSTLVWRMNPVNPLSFLDYIVRRLGFKDQLCSQLLCKCERLLLSVIIDCRFVCFLPSVLATAIIFQVINDIEPHLATKYHNQLMGFLQIDKDKMEECSRFILEASWKGQRKEWKNNKQRFGLVDMSCSSNGGNRNVDTMVSSPETASKKRKIDEQHP* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24557946 24559235 + CsaV3_4G034710.1 Csa04g02445 528055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02445 342 MobiDBLite consensus disorder prediction 314 328 - -
Csa04g02445 342 Gene3D - 195 283 - -
Csa04g02445 342 ProSitePatterns Cyclins signature. 94 125 IPR006671 -
Csa04g02445 342 PANTHER CYCLIN D3.1 PROTEIN 60 334 - -
Csa04g02445 342 Pfam Cyclin, C-terminal domain 196 294 IPR004367 -
Csa04g02445 342 Pfam Cyclin, N-terminal domain 92 194 IPR006671 -
Csa04g02445 342 MobiDBLite consensus disorder prediction 314 342 - -
Csa04g02445 342 SUPERFAMILY Cyclin-like 57 194 IPR036915 -
Csa04g02445 342 Gene3D - 92 194 - -
Csa04g02445 342 PANTHER CYCLINS 60 334 IPR039361 -
Csa04g02445 342 CDD CYCLIN 94 186 IPR013763 -
Csa04g02445 342 SUPERFAMILY Cyclin-like 197 293 IPR036915 -
Csa04g02445 342 SMART cyclin_7 99 187 IPR013763 -
Csa04g02445 342 SMART Cyclin_C_2 196 314 IPR004367 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01926 Csa04g02445 CCT
Csa02g01926 Csa04g02445 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01827 Csa-Chr3:14012615 Csa04g02445 Csa-Chr4:24557946 4.87E-84 dispersed
Csa04g02445 Csa-Chr4:24557946 Csa06g03126 Csa-Chr6:26701732 2.22E-42 dispersed
Csa02g01926 Csa-Chr2:18094023 Csa04g02445 Csa-Chr4:24557946 3.85E-107 wgd
Csa04g02445 Csa-Chr4:24557946 Csa06g02966 Csa-Chr6:25660299 1.06E-75 wgd
Csa04g02445 Csa-Chr4:24557946 Csa07g00732 Csa-Chr7:5194238 1.11E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02445 K14505 - csv:101218302 699.893