Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02445 ATGGCCAAACCACATTGTTACCCATCTTTATCAATTTCAACTCACCACAACACTTCCCTTCTTCTTGATTCCCTCTATTGCTTCGAAGATGAGGTTGAAGATGGCCATTCCAATTCCCAACCGAAGTTCCAACCTTTCTCAATTAATCTTAACATCAATTCCCCAAACTCTGTTTTCTTGTCCGATTGGGAAGACGATGAATTGGTCTCTCTGTTTTCAAAAGAGAACGGAAATAAGCTTCACAACACTCTCCCACATAATCCTTCTCTAGCTGCAGCTCGTTCCAAGGCTGTTCACTGGATTCTCAAGGTCAATTCTCATTACTCTTTCTCTGCACACACCGCCGTTTTGGCCGTTGATTATGTCGATAGGTTTCTTTCCACCCCACATTTTCATATTGAGAAGCCATGGATGACCCATCTCACTGCCATTGCTTCTTTATCTCTCGCCGCTAAAGTGGAAGAAACCCAAGTCCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTTTTTCGAAGCTAAAACCATTACAAGAATGGAAATTCTTGTTCTCTCTACACTTGTTTGGAGAATGAATCCAGTGAACCCACTTTCCTTTCTGGATTATATTGTAAGACGTCTCGGCTTCAAAGACCAACTCTGCTCTCAACTCCTCTGTAAATGTGAACGATTACTTCTCTCTGTCATTATAGATTGTAGATTCGTATGTTTTCTCCCATCAGTATTAGCAACCGCTATTATTTTCCAAGTTATCAACGACATAGAACCCCATCTCGCCACAAAATACCACAATCAGCTCATGGGTTTTCTTCAAATCGACAAGGATAAAATGGAGGAATGCTCACGATTCATCTTAGAAGCTTCATGGAAAGGACAGAGAAAGGAATGGAAGAATAATAAACAAAGATTTGGGTTAGTCGACATGTCATGCAGCTCAAATGGTGGGAATAGGAATGTGGACACTATGGTATCGTCGCCGGAGACAGCATCTAAGAAGAGAAAAATTGATGAACAACATCCGTAG 1029 41.5 MAKPHCYPSLSISTHHNTSLLLDSLYCFEDEVEDGHSNSQPKFQPFSINLNINSPNSVFLSDWEDDELVSLFSKENGNKLHNTLPHNPSLAAARSKAVHWILKVNSHYSFSAHTAVLAVDYVDRFLSTPHFHIEKPWMTHLTAIASLSLAAKVEETQVPLLLDLQVEENEYFFEAKTITRMEILVLSTLVWRMNPVNPLSFLDYIVRRLGFKDQLCSQLLCKCERLLLSVIIDCRFVCFLPSVLATAIIFQVINDIEPHLATKYHNQLMGFLQIDKDKMEECSRFILEASWKGQRKEWKNNKQRFGLVDMSCSSNGGNRNVDTMVSSPETASKKRKIDEQHP* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24557946 24559235 + CsaV3_4G034710.1 Csa04g02445 528055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02445 342 MobiDBLite consensus disorder prediction 314 328 - -
Csa04g02445 342 Gene3D - 195 283 - -
Csa04g02445 342 ProSitePatterns Cyclins signature. 94 125 IPR006671 -
Csa04g02445 342 PANTHER CYCLIN D3.1 PROTEIN 60 334 - -
Csa04g02445 342 Pfam Cyclin, C-terminal domain 196 294 IPR004367 -
Csa04g02445 342 Pfam Cyclin, N-terminal domain 92 194 IPR006671 -
Csa04g02445 342 MobiDBLite consensus disorder prediction 314 342 - -
Csa04g02445 342 SUPERFAMILY Cyclin-like 57 194 IPR036915 -
Csa04g02445 342 Gene3D - 92 194 - -
Csa04g02445 342 PANTHER CYCLINS 60 334 IPR039361 -
Csa04g02445 342 CDD CYCLIN 94 186 IPR013763 -
Csa04g02445 342 SUPERFAMILY Cyclin-like 197 293 IPR036915 -
Csa04g02445 342 SMART cyclin_7 99 187 IPR013763 -
Csa04g02445 342 SMART Cyclin_C_2 196 314 IPR004367 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02445 K14505 CYCD3; cyclin D3, plant - csv:101218302 699.893
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01926 Csa04g02445 CCT
Csa02g01926 Csa04g02445 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01827 Csa-Chr3:14012615 Csa04g02445 Csa-Chr4:24557946 4.87E-84 dispersed
Csa04g02445 Csa-Chr4:24557946 Csa06g03126 Csa-Chr6:26701732 2.22E-42 dispersed
Csa02g01926 Csa-Chr2:18094023 Csa04g02445 Csa-Chr4:24557946 3.85E-107 wgd
Csa04g02445 Csa-Chr4:24557946 Csa06g02966 Csa-Chr6:25660299 1.06E-75 wgd
Csa04g02445 Csa-Chr4:24557946 Csa07g00732 Csa-Chr7:5194238 1.11E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g719 Blo01g01517 Blo12g00970 . . . . Bma04g00152 . Cmo05g00163 Cmo12g00510 Cma01g01813 Cma09g00261 Car01g01415 Car12g00528 Sed10g2003 Cpe06g00180 Cpe07g00498 Bhi04g00381 Tan02g0947 Cmetu01g0988 . Hepe08g1303 . Lcy13g2102 Cla08g01590 Cam08g2089 Cec08g1670 Cco08g1802 Clacu08g1775 . Cre08g1559 . Cone7ag1351 Cone17ag0862 Cone20ag0209 Lsi04g01520 Csa04g02445 . Cme03g02070 Blo17g00869 Blo18g00706 . . Bpe02g01789 Bpe05g00034 Bma01g00666 . Sed11g0930 Cmo01g01869 Cmo09g00254 Cma12g00567 Cma05g00163 Car05g00140 Car09g00219 Cpe11g00137 Cpe02g00199 Bhi09g03276 Tan01g4734 Cmetu07g1860 . Hepe01g1799 Mch11g0329 . Cla05g02076 Cam05g2226 Cec05g2245 Cco05g2287 Clacu05g2220 Cmu05g2087 Cre05g2211 Lsi08g01495 Csa02g01926 Chy07g00160 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02741 . 1 295 Core Cell Cycle Gene Families AT3G48750 85.8 3.3e-151 531.2
Csa07g00931 . 1 299 Core Cell Cycle Gene Families AT3G48750 83.9 4.5e-148 520.8
Csa04g01158 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 6.8e-96 347.4
Csa04g02739 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.7 1.3e-94 343.2
Csa04g01158 . 1 306 Core Cell Cycle Gene Families AT3G54180 84.5 9.9e-154 539.7
Csa04g02739 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.3 8.7e-118 420.2
Csa05g02741 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 1.7e-92 336.3
Csa07g00931 . 1 298 Core Cell Cycle Gene Families AT3G54180 53.0 9.1e-91 330.5
Csa04g01158 . 1 306 Core Cell Cycle Gene Families AT2G38620 71.6 2.5e-123 438.3
Csa04g02739 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.2 1.3e-92 336.3
Csa04g02739 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 3.7e-156 547.7
Csa04g01158 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 5.2e-118 421.0
Csa05g02741 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 8.9e-94 340.5
Csa07g00931 . 1 298 Core Cell Cycle Gene Families AT1G76540 52.3 1.4e-91 333.2
Csa04g02739 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 1.2e-159 559.3
Csa04g01158 . 1 306 Core Cell Cycle Gene Families AT1G20930 66.8 1.5e-120 429.5
Csa05g02741 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 3.9e-97 351.7
Csa07g00931 . 1 298 Core Cell Cycle Gene Families AT1G20930 54.2 6.2e-95 344.4
Csa03g03950 . 1 516 Core Cell Cycle Gene Families AT5G10270 73.9 5.6e-215 743.8
Csa04g01219 . 1 394 Core Cell Cycle Gene Families AT5G10270 77.7 2.0e-180 629.0
Csa01g02837 CCT,ECH 113 431 Core Cell Cycle Gene Families AT5G10270 51.6 1.6e-97 353.6
Csa03g01943 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.4 8.1e-97 351.3
Csa03g01412 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.6 2.4e-96 349.7
Csa01g00986 . 88 404 Core Cell Cycle Gene Families AT5G10270 52.9 6.9e-96 348.2
Csa06g01089 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.6 5.8e-95 345.1
Csa05g00932 . 147 463 Core Cell Cycle Gene Families AT5G10270 51.5 4.9e-94 342.0
Csa02g00346 CCT,ECH 101 419 Core Cell Cycle Gene Families AT5G10270 50.3 1.1e-93 340.9
Csa05g03200 . 9 318 Core Cell Cycle Gene Families AT5G10270 52.0 9.3e-93 337.8
Csa01g00572 . 120 438 Core Cell Cycle Gene Families AT5G10270 50.7 3.0e-91 332.8
Csa03g03950 . 65 514 Core Cell Cycle Gene Families AT5G64960 69.9 3.6e-176 614.8
Csa04g01219 . 25 393 Core Cell Cycle Gene Families AT5G64960 74.2 8.9e-159 557.0
Csa06g01089 . 196 458 Core Cell Cycle Gene Families AT5G64960 53.6 3.3e-81 299.3
Csa03g01943 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.0 7.4e-81 298.1
Csa01g02837 CCT,ECH 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 1.3e-80 297.4
Csa01g00986 . 142 404 Core Cell Cycle Gene Families AT5G64960 52.9 1.7e-80 297.0
Csa06g01090 CCT,ECH 182 444 Core Cell Cycle Gene Families AT5G64960 53.2 3.7e-80 295.8
Csa03g01412 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.4 1.8e-79 293.5
Csa05g03200 . 56 318 Core Cell Cycle Gene Families AT5G64960 52.9 2.4e-79 293.1
Csa05g00932 . 201 463 Core Cell Cycle Gene Families AT5G64960 52.2 1.2e-78 290.8
Csa01g00416 . 4 416 Core Cell Cycle Gene Families AT1G73690 74.1 1.3e-174 609.4
Csa01g00416 . 12 344 Core Cell Cycle Gene Families AT1G66750 77.2 2.2e-154 542.0
Csa01g00416 . 8 417 Core Cell Cycle Gene Families AT1G18040 74.9 3.7e-174 607.8
Csa04g02101 . 30 482 Core Cell Cycle Gene Families AT5G63610 78.0 5.6e-201 697.2
Csa02g00116 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.4 1.9e-172 602.4
Csa06g02128 . 5 503 Core Cell Cycle Gene Families AT1G44110 59.8 9.2e-148 520.4
Csa07g02205 . 225 503 Core Cell Cycle Gene Families AT1G44110 54.8 6.3e-88 321.6
Csa02g02345 . 176 437 Core Cell Cycle Gene Families AT1G44110 53.8 4.2e-76 282.3
Csa02g01916 CCT,ECH 90 352 Core Cell Cycle Gene Families AT1G44110 52.1 1.6e-75 280.4
Csa03g04360 . 206 374 Core Cell Cycle Gene Families AT1G44110 59.2 4.4e-57 219.2
Csa07g02205 . 224 499 Core Cell Cycle Gene Families AT1G77390 51.1 8.2e-77 284.6
Csa02g02345 . 176 433 Core Cell Cycle Gene Families AT1G77390 50.8 6.3e-69 258.5
Csa03g04360 . 206 374 Core Cell Cycle Gene Families AT1G77390 53.8 7.7e-51 198.4
Csa02g02345 . 55 449 Core Cell Cycle Gene Families AT5G25380 53.9 6.9e-100 361.3
Csa06g02128 . 216 496 Core Cell Cycle Gene Families AT5G25380 53.7 1.3e-79 293.9
Csa07g00705 . 201 424 Core Cell Cycle Gene Families AT5G25380 52.0 3.1e-60 229.6
Csa02g02345 . 169 390 Core Cell Cycle Gene Families AT5G11300 68.9 1.1e-78 290.8
Csa06g02128 . 216 440 Core Cell Cycle Gene Families AT5G11300 56.0 8.5e-68 254.6
Csa02g01916 CCT,ECH 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 4.5e-61 232.3
Csa04g02456 CCT,ECH 96 319 Core Cell Cycle Gene Families AT5G11300 52.7 1.6e-58 223.8
Csa07g02205 . 157 504 Core Cell Cycle Gene Families AT1G15570 61.3 1.1e-118 423.7
Csa06g02128 . 217 500 Core Cell Cycle Gene Families AT1G15570 54.2 4.0e-79 292.4
Csa07g02205 . 4 503 Core Cell Cycle Gene Families AT1G80370 51.2 1.3e-120 430.3
Csa06g02128 . 217 501 Core Cell Cycle Gene Families AT1G80370 54.7 1.4e-79 293.9
Csa04g02456 CCT,ECH 1 386 Core Cell Cycle Gene Families AT5G43080 55.0 1.5e-110 396.4
Csa02g01916 CCT,ECH 5 352 Core Cell Cycle Gene Families AT5G43080 58.7 1.5e-105 379.8
Csa06g02128 . 218 503 Core Cell Cycle Gene Families AT5G43080 51.4 2.0e-78 289.7
Csa02g02345 . 173 439 Core Cell Cycle Gene Families AT5G43080 50.9 4.3e-73 271.9
Csa03g04360 . 208 373 Core Cell Cycle Gene Families AT5G43080 56.0 9.7e-49 191.0
Csa02g01916 CCT,ECH 1 354 Core Cell Cycle Gene Families AT1G47210 59.4 7.5e-116 414.1
Csa04g02456 CCT,ECH 1 386 Core Cell Cycle Gene Families AT1G47210 53.9 1.9e-111 399.4
Csa07g00705 . 137 432 Core Cell Cycle Gene Families AT1G47210 50.7 3.9e-80 295.4
Csa07g02205 . 226 498 Core Cell Cycle Gene Families AT1G47210 51.4 7.6e-76 281.2
Csa02g02345 . 173 439 Core Cell Cycle Gene Families AT1G47210 50.2 1.1e-71 267.3
Csa03g04360 . 208 374 Core Cell Cycle Gene Families AT1G47210 55.6 8.8e-48 188.0
Csa04g02456 CCT,ECH 94 383 Core Cell Cycle Gene Families AT1G47220 57.2 3.3e-91 332.0
Csa02g01916 CCT,ECH 78 354 Core Cell Cycle Gene Families AT1G47220 58.1 3.4e-88 322.0
Csa03g04360 . 208 376 Core Cell Cycle Gene Families AT1G47220 54.4 1.2e-45 180.6
Csa04g02456 CCT,ECH 1 385 Core Cell Cycle Gene Families AT1G47230 56.7 3.5e-113 405.2
Csa02g01916 CCT,ECH 1 352 Core Cell Cycle Gene Families AT1G47230 57.3 1.8e-106 382.9
Csa07g00705 . 147 432 Core Cell Cycle Gene Families AT1G47230 52.8 1.6e-78 290.0
Csa06g02128 . 212 505 Core Cell Cycle Gene Families AT1G47230 50.5 5.8e-76 281.6
Csa07g02205 . 228 498 Core Cell Cycle Gene Families AT1G47230 51.6 6.0e-73 271.6
Csa03g04360 . 209 372 Core Cell Cycle Gene Families AT1G47230 55.7 4.9e-43 172.2
Csa04g01909 . 1 448 Core Cell Cycle Gene Families AT4G37490 53.9 1.6e-114 409.8
Csa04g01909 . 1 341 Core Cell Cycle Gene Families AT5G06150 54.8 2.2e-82 302.8
Csa04g01909 . 1 405 Core Cell Cycle Gene Families AT3G11520 56.1 9.5e-106 380.6
Csa06g02485 . 25 365 Core Cell Cycle Gene Families AT3G11520 51.4 7.3e-82 301.2
Csa06g03395 . 172 398 Core Cell Cycle Gene Families AT3G11520 50.7 3.5e-60 229.2
Csa06g02485 . 14 413 Core Cell Cycle Gene Families AT2G26760 50.5 2.2e-102 369.4
Csa06g03395 . 8 441 Core Cell Cycle Gene Families AT2G17620 60.3 8.1e-130 460.7
Csa04g02698 . 37 438 Core Cell Cycle Gene Families AT2G17620 51.9 2.6e-104 375.9
Csa06g03395 . 5 398 Core Cell Cycle Gene Families AT4G35620 58.2 4.7e-105 378.3
Csa04g02698 . 37 393 Core Cell Cycle Gene Families AT4G35620 52.6 2.6e-87 319.3
Csa06g02485 . 139 365 Core Cell Cycle Gene Families AT4G35620 50.9 4.9e-54 208.8
Csa04g02698 . 1 436 Core Cell Cycle Gene Families AT1G20610 64.2 8.9e-145 510.4
Csa06g03395 . 1 441 Core Cell Cycle Gene Families AT1G20610 56.6 1.1e-123 440.3
Csa04g02698 . 1 333 Core Cell Cycle Gene Families AT1G76310 63.2 1.6e-104 376.3
Csa06g03395 . 1 337 Core Cell Cycle Gene Families AT1G76310 54.2 5.9e-83 304.7
Csa04g01909 . 176 342 Core Cell Cycle Gene Families AT1G76310 52.1 2.5e-41 166.4
Csa06g02485 . 135 302 Core Cell Cycle Gene Families AT1G76310 52.4 3.2e-41 166.0
Csa05g01752 . 1 329 Core Cell Cycle Gene Families AT1G70210 63.5 1.3e-109 393.3
Csa05g02366 . 1 328 Core Cell Cycle Gene Families AT1G70210 62.5 6.6e-103 370.9
Csa06g03126 . 1 332 Core Cell Cycle Gene Families AT2G22490 50.3 4.0e-82 302.0
Csa04g02445 CCT,ECH 63 288 Core Cell Cycle Gene Families AT4G34160 51.3 1.9e-58 223.4
Csa02g01926 CCT,ECH 59 332 Core Cell Cycle Gene Families AT5G67260 50.2 1.1e-67 254.2
Csa02g01926 CCT,ECH 56 344 Core Cell Cycle Gene Families AT3G50070 51.9 5.8e-73 271.6
Csa06g03126 . 49 272 Core Cell Cycle Gene Families AT5G65420 58.6 1.3e-69 260.0
Csa02g02191 . 63 262 Core Cell Cycle Gene Families AT5G65420 56.4 3.9e-61 231.9
Csa06g03126 . 54 230 Core Cell Cycle Gene Families AT5G10440 58.8 5.8e-55 211.1
Csa02g02191 . 58 236 Core Cell Cycle Gene Families AT5G10440 52.8 4.8e-49 191.4
Csa06g02901 . 1 277 Core Cell Cycle Gene Families AT5G27620 66.4 8.4e-102 367.1
Csa01g01406 CCT 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 5.8e-43 169.9
Csa01g01406 CCT 1 83 Core Cell Cycle Gene Families AT2G27970 84.3 1.1e-38 155.6
Csa05g02874 . 32 1025 Core Cell Cycle Gene Families AT3G12280 73.4 0.0e+00 1407.9
Csa07g01812 . 2 484 Core Cell Cycle Gene Families AT1G02970 59.3 1.0e-155 547.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012604 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02445 Csa_Chr04 FPKM 18.61574 18.177908 9.860314 9.792816 0.705033 0.298408 0.266183 0.0 0.0 0.0