Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02447 ATGCTCTACTTATGCCTATTATTTCTCACCACCGTCGCCCAAATCCCCTCCACCTCTCAACAACCATCGCCACCCACCGACATTTTCCTCCTCGCCGGACAGAGCAACATGGCTGGACGAGGCGGTGTCACCAATAGCACCCTCACTCACCACCCCACCTGGGACGGTGTTGTGCCACCCCAATGCTCACCAACCCCTTACATCCTCCGCCTCGCCGCAGATCTCACTTGGGTTGAAGCTCGCGAGCCACTCCACGCAGACATCGATTTTCTCAAGACCAACGGGATTGGGCCGGGCATGCCCTTTGCCAACACCATTCTAATGGATAAACCCGGGGGTCGGACGGTAATCGGTCTGGTACCATGTGCGATGGGTGGGACTTCGATCAAGGAATGGCAAAAGGGATCCAATCTGTACAACCATTTATTGAGCAGAGCCGACGCATCGGTTCTGAGTGGGGGTAAAATTAAAGCGCTTCTATGGTATCAAGGTGAAAGCGATACTGAAAATGCAGAAGATTCGGAGCTATACGGTGGCAGATTGAAGAAGTTTTTCACTGGCATTCGCTCCGATCTGAAGATTCCATTGCTCCCAATTATTCAGGTGGGTATTGCGTCGGGAGAGGGAGAGTATAAAGAAGGAGTAAGAAGGGGGCAATTTGGAATTGATTTAGTGAACGTGATGATCGTGGATGCATTGGGGCTTCCATTGGAACCAGATGGGCTTCACTTGACCACTACTTCACAAGTTCGATTGGGCGGGCTTTTGGCTGATGCGTATAGGCGATTTCCATCACACCCATTGGCTACTCCCTTAACAAATGCTGCTCCTATCTCAAGAATTTCTACCATTTTCTTTCCATTTGTTGGATTTTTACGTTTTTGTTGCCATTCTTACGTCTAA 903 49.83 MLYLCLLFLTTVAQIPSTSQQPSPPTDIFLLAGQSNMAGRGGVTNSTLTHHPTWDGVVPPQCSPTPYILRLAADLTWVEAREPLHADIDFLKTNGIGPGMPFANTILMDKPGGRTVIGLVPCAMGGTSIKEWQKGSNLYNHLLSRADASVLSGGKIKALLWYQGESDTENAEDSELYGGRLKKFFTGIRSDLKIPLLPIIQVGIASGEGEYKEGVRRGQFGIDLVNVMIVDALGLPLEPDGLHLTTTSQVRLGGLLADAYRRFPSHPLATPLTNAAPISRISTIFFPFVGFLRFCCHSYV* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24569750 24571306 - CsaV3_4G034730.1 Csa04g02447 528057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02447 300 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 5 261 - -
Csa04g02447 300 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 26 260 IPR005181 -
Csa04g02447 300 SUPERFAMILY SGNH hydrolase 26 263 - -
Csa04g02447 300 Gene3D SGNH hydrolase 24 262 IPR036514 -
Csa04g02447 300 PANTHER OS06G0729725 PROTEIN 5 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02447 - - - csv:101206765 602.823
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01923 Csa04g02447 CCT
Csa02g01923 Csa04g02447 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02447 Csa-Chr4:24569750 Csa06g00536 Csa-Chr6:4555342 9.54E-65 dispersed
Csa02g01922 Csa-Chr2:18069067 Csa04g02447 Csa-Chr4:24569750 8.65E-60 wgd
Csa04g02447 Csa-Chr4:24569750 Csa07g00712 Csa-Chr7:5078232 2.14E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g715 . Blo12g00972 . Bda03g00197 . Bpe04g00169 Bma04g00150 . . Cmo12g00515 . . . . . . Cpe07g00500 Bhi04g00386 . . . Hepe03g0729 . Lcy13g2109 Cla08g01593 Cam08g2093 Cec08g1674 Cco08g1805 Clacu08g1778 . Cre08g1561 . . . Cone20ag0211 . Csa04g02447 . Cme03g02074 . . . . . Bpe05g00378 . . . . . Cma12g00572 . . . . . . . . . . . . . . . . . . . Lsi08g01499 Csa02g01923 Chy07g00162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012322 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02447 Csa_Chr04 FPKM 11.698551 15.351752 13.246945 9.948233 22.279587 28.226427 24.201029 9.381505 10.789759 9.41879