Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02449 ATGGGAAGCCCTGAGAATCGGGTTGCTTCCGACTCCGCCGATACCACTTCCAAGAATGACTCCGAAGACGACGACGACAATGGAGTTCAGAACCCCCCTTCCCATCCTTGTCCTTTCTCTGAAGGAGAGAAGGTTCTTGCCTTTCATAGCTTCGTCATTTATGAAGCTAAGGTACTAAAAACAGAATATCAGTTGAAAGAATGGAGATGTTATGTTCATTACCTTGGATGGAGCAAAACCTGGGATGAGTGGGTAGGACTTGATCGATTACTGAAGTTTACAGAAGAGAATGTGCAGAAACAGCAGGAACTCAATGAGAAGAGGGGGACTGACAAGAAGGCATCTCGAGCGTCCCATATCAAGCCCAAGAACGTGGTTAAAGGGAAGAAGCGAAAGAATGATGCTAGTAAGGAAAAGGGTGCCATGAATGTTGAAAAGCTTGTGAGTATACAGATTCCAGTTAAACTAAAGAAGCAACTAGTTGATGATAGTGAGTTTGTAACGCATCTTGGGAAGCTAGTAAAGCTTCCACGCACACCTAATGTAGACGATATAATGAAGAAATATCTTGAGTACAGACTGAAGAAGGATGCAACGAAAGATGAATCAATTGGAGAAATCGTGAAGGGGCTGATTTGTTACTTCGATAAAGCACTACCTGTGATGCTTCTATACAAAAGTGAACGACAACAATATGAAGAATTGATGATCAATGATGTCTCCCCTTCTTCCATATATGGTGCCGAACACCTTCTACGTCTATTTGTTAGGTTGCCTGAGTTGTTGTCTCAAGCCAATATTGAAGAGGAGACTTTGATGGAACTGCAACAGAAGTTAGTTGACTTACTCAAGTTTTTAAGGAAGAATCAGAATGCGTTTTTCTTGTCATCGTACCATGTGCCTGAGAATATGGAAACAAGTACCAACAACGCCGATGACTAA 942 42.04 MGSPENRVASDSADTTSKNDSEDDDDNGVQNPPSHPCPFSEGEKVLAFHSFVIYEAKVLKTEYQLKEWRCYVHYLGWSKTWDEWVGLDRLLKFTEENVQKQQELNEKRGTDKKASRASHIKPKNVVKGKKRKNDASKEKGAMNVEKLVSIQIPVKLKKQLVDDSEFVTHLGKLVKLPRTPNVDDIMKKYLEYRLKKDATKDESIGEIVKGLICYFDKALPVMLLYKSERQQYEELMINDVSPSSIYGAEHLLRLFVRLPELLSQANIEEETLMELQQKLVDLLKFLRKNQNAFFLSSYHVPENMETSTNNADD* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24579665 24585179 - CsaV3_4G034740.1 Csa04g02449 528059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02449 313 MobiDBLite consensus disorder prediction 1 40 - -
Csa04g02449 313 Coils Coil 258 278 - -
Csa04g02449 313 MobiDBLite consensus disorder prediction 1 15 - -
Csa04g02449 313 Gene3D MRG domain 142 311 IPR038217 -
Csa04g02449 313 MobiDBLite consensus disorder prediction 101 118 - -
Csa04g02449 313 ProSiteProfiles MRG domain profile. 144 311 IPR026541 -
Csa04g02449 313 PIRSF EAF3_MRG15 33 311 IPR008676 GO:0005634|GO:0006325|GO:0006355
Csa04g02449 313 PANTHER PROTEIN MRG1-LIKE ISOFORM X1 7 313 - -
Csa04g02449 313 SUPERFAMILY Chromo domain-like 29 168 IPR016197 -
Csa04g02449 313 MobiDBLite consensus disorder prediction 101 138 - -
Csa04g02449 313 Pfam MRG 130 298 IPR026541 -
Csa04g02449 313 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 7 313 IPR008676 GO:0005634|GO:0006325|GO:0006355
Csa04g02449 313 CDD CBD_MSL3_like 43 99 - -
Csa04g02449 313 Pfam RNA binding activity-knot of a chromodomain 40 90 IPR025995 -
Csa04g02449 313 Gene3D - 23 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02449 K11339 MORF4L1, MRG15, EAF3; mortality factor 4-like protein 1 - csv:101219247 619.002
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02449 Csa-Chr4:24579665 Csa06g02972 Csa-Chr6:25691648 2.12E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g701 . . . . . . Bma04g00149 . . . . Cma09g00262 . . . Cpe06g00181 . . . . . . . . . . . . . . . Cone4ag1600 Cone7ag1349 . . Lsi04g01515 Csa04g02449 . . . . . . . . . . . . Cmo09g00256 . . . Car09g00220 . . Bhi09g03270 . . . . . . Cla05g02080 Cam05g2231 Cec05g2250 Cco05g2291 Clacu05g2225 Cmu05g2091 Cre05g2216 . . Chy07g00165 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001712 2 6 2 2 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 2 2 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02449 Csa_Chr04 FPKM 1.047473 1.332998 3.094694 3.538902 23.806164 22.222281 24.410061 0.0 0.0 0.0