Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02454 ATGGAACAACAAACCTCTTTCTTCTTCTCTCAGGATCATCATTTCCATCCAATCTCTATCCCTCTCTTAGCCATTTTCTTAACTTCTCTCTTTCTCATTTCCAAATTTCGAAGAACACAGCACACAAAACTGCTGCCACCAAGCCCTCCTTCTCTTCCTGTAATCGGTCACCTTCATCTTCTCAAAGAACCATTCCACCAAATGTTACAAGATTTCTCTAAAAAATACGGCCCTGTTTTCTCTCTCACTCTCGGTTTCCGCCCCCTCGTAGTTGTCTCCTCCCCTTCCGCCGTACAAGAATGCTTCACCAAAAACGACATTGTTTTCGCCAGCCGCCCCCGTATGCTGTCCGGAAAGATCCTCAATTACGATTACACAGCTGTTGGTGCCACCGCGTACGGGCAGCACTGGCGTATCATGCGACGGATAGCTACCACCGAATTGCTGTCCACCAAGCGTCTCAACGACTTGAGTAAAATCAGAGAAGAGGAGGTGAAGTTGTGGGTGAAAAGATTGTACGGATCAGTGACGAGGGCGGAAGTTAACAAGGGAGGTAGAGTGGGATTAAGGTCGAAACTGACGGAGCTTTCGTTCAATATCGCGTTGATGTTAATGGCGGGGAGAAGGTACTTTGGAGATGAAATGGAAGCGGGGGAGAGTGAGGAGGCGAAGGAGTTGAAGGAGACGATGAAGCAAGTTCCTCTGTTGAGTGGAGCTTCGTATCCGGCGGACTTTTTGTCGGTTTTGAAGTTGATTGATTTTCAAGGATTTAGGAAGAGATTGGCGAAGGTGAGAGTGGATGGAGATGCATTTGCTCAAAGTCTGGTGGATGAAAGACGGAAATTGAAGGGTTCTTGGTGTGAGAGGAAGACGATGATTGATAGTATGTTGTGTTTGCAGGAGTCAGACCCTGAGTATTATAAGGATGATATTATTAAGGGACAATTCTTGACTTTACTTGCTGCAGGAACCGATACAACAGCAAGCACGTTAGAATGGGCAATGTCCCTACTCCTAAACCATCCAACTGTTCTAGAGAAGGCTTGGACTGAGATAAACCAAGTTGTTGGAGACCAAAGACTAATAAGGGAAGCTGATACAAACAAGCTACACTATCTTCAAGCCATAATCAACGAAACCTACCGTCTATTTCCCGCTCTTCCAATACTTGTACCACGTGAATCATCAGAAGATTGCACGATTGGAGGGTTTGACATTCCAAAAGGAACCATGTTGGTGGTGAATGCTTGGGCCGTCCATCGAGACCCCAACGTGTGGGAAGATCCTAACTGTTTTAAACCCGAGAGGTTTAAACAAGGGGAAACTGTGGAGGTCAATAAATTGTTGCCATTCGGAATGGGACGAAGGGCTTGTCCGGGGGCTGGGCTTGCTCATAGGGTGGTGTCTTTGGCTTTGGCTACTCTTATTCAATGCTTTGAATGGGGCAAACTCGACAACCAAAAAGATGTTGACTTGTGTCCAGGAATTGGACTCACTATGCCTAAAGCTATTCCTCTTGAAGCTATGTGCAAACCTCGTGCTTCCGTCACACATTTACTATCACAACTTTGA 1572 46.06 MEQQTSFFFSQDHHFHPISIPLLAIFLTSLFLISKFRRTQHTKLLPPSPPSLPVIGHLHLLKEPFHQMLQDFSKKYGPVFSLTLGFRPLVVVSSPSAVQECFTKNDIVFASRPRMLSGKILNYDYTAVGATAYGQHWRIMRRIATTELLSTKRLNDLSKIREEEVKLWVKRLYGSVTRAEVNKGGRVGLRSKLTELSFNIALMLMAGRRYFGDEMEAGESEEAKELKETMKQVPLLSGASYPADFLSVLKLIDFQGFRKRLAKVRVDGDAFAQSLVDERRKLKGSWCERKTMIDSMLCLQESDPEYYKDDIIKGQFLTLLAAGTDTTASTLEWAMSLLLNHPTVLEKAWTEINQVVGDQRLIREADTNKLHYLQAIINETYRLFPALPILVPRESSEDCTIGGFDIPKGTMLVVNAWAVHRDPNVWEDPNCFKPERFKQGETVEVNKLLPFGMGRRACPGAGLAHRVVSLALATLIQCFEWGKLDNQKDVDLCPGIGLTMPKAIPLEAMCKPRASVTHLLSQL* 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24605411 24607480 - CsaV3_4G034800.1 Csa04g02454 528064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02454 523 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 PRINTS E-class P450 group I signature 97 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 PRINTS E-class P450 group I signature 196 214 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 PRINTS E-class P450 group I signature 311 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 PRINTS E-class P450 group I signature 331 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 PRINTS E-class P450 group I signature 374 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 PRINTS E-class P450 group I signature 415 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 Gene3D Cytochrome P450 32 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 Pfam Cytochrome P450 46 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 23 517 - -
Csa04g02454 523 PRINTS P450 superfamily signature 322 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02454 523 PANTHER CYTOCHROME P450 FAMILY PROTEIN 23 517 - -
Csa04g02454 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Csa04g02454 523 SUPERFAMILY Cytochrome P450 46 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02454 Csa-Chr4:24605411 Csa06g02979 Csa-Chr6:25742453 2.62E-172 dispersed
Csa04g02453 Csa-Chr4:24601161 Csa04g02454 Csa-Chr4:24605411 0 tandem
Csa04g02454 Csa-Chr4:24605411 Csa06g02975 Csa-Chr6:25719827 6.46E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02454 K13260 - csv:101207242 1027.7