Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02456 ATGGCGGATAAGGAGAATATATTTCGATTCACCAGAGCTTCTAAGAAGAGAGCCGCCGACGCTGCTGCTACCCTCGACGACCGCTCCTCTAACAAGAGGAGAGTCGTTCTCGGTGAGCTTCCTATTTTACAGAATGCTTCTTCTTCCCTCGATCGTAAGTCCAGGTCTAGAGCTACCAGGCATAGACGGAGAGTAAAATCCAAGGACACTGCTGGCACCAGTGCTGCTGCTGAAATCAATACACTTCCCCAAGCCGAAGGTGATGTCAAGTTATCTGATGAGCCCAATTCTGAAGACCCGCAAATGTGCAGGGTTTACGCTTCTGATATTTATGAATATCTTCGTGCAATGGAGACTGATCCAAGAAGAAGACCCTTACCAGATTACATTGGGAGGGTGCAAAATGATATTAGTGCCAATATGAGGGGGATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACTCTTTACCTCTCTATTTCATATGTTGATAGATACTTATCCCTAAATGCAATCAGCAGGCAAAAACTTCAGTTGGTGGGCGTTTCTGCTATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAGGCTGAAATATTGAAGTCACTGGAATTTGAACTTGGAAATCCCACGATAAAGACCTTTTTAAGGCAAGTGCAATGGGTCTATCTTTCACTGAGATTCACATTGGTTGCTCAAGAGACTTACGAGTTTAATACCTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTTAAATTCTTACCGTCTCTTGTTGCTGCATCTGTTACATTTCTAGCCCGATTTATGATTCAATCCAAGAAGCATCCATGGACCTCCAGATTGGAGCATTTTACTGGATATAAGCCAGCTGATATGAAGGATTGCATTCTACTTGTACATGATTTATACCTTAGCAGAAGAGGAGGTGCTTTGTCAGCTATAAGGGAGAAATACAAACAGCACAAGTTCAAATTTGTGTCTGTAATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1158 41.71 MADKENIFRFTRASKKRAADAAATLDDRSSNKRRVVLGELPILQNASSSLDRKSRSRATRHRRRVKSKDTAGTSAAAEINTLPQAEGDVKLSDEPNSEDPQMCRVYASDIYEYLRAMETDPRRRPLPDYIGRVQNDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNAISRQKLQLVGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEAEILKSLEFELGNPTIKTFLRQVQWVYLSLRFTLVAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLVAASVTFLARFMIQSKKHPWTSRLEHFTGYKPADMKDCILLVHDLYLSRRGGALSAIREKYKQHKFKFVSVMPSPPEIPIPYFEDVRI* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24614388 24616562 - CsaV3_4G034820.1 Csa04g02456 528066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02456 385 PANTHER CYCLIN-A3-1-RELATED 24 383 - -
Csa04g02456 385 SMART cyclin_7 147 231 IPR013763 -
Csa04g02456 385 SMART cyclin_7 257 341 IPR013763 -
Csa04g02456 385 Gene3D - 123 238 - -
Csa04g02456 385 CDD CYCLIN 274 340 IPR013763 -
Csa04g02456 385 ProSitePatterns Cyclins signature. 142 173 IPR006671 -
Csa04g02456 385 Pfam Cyclin, N-terminal domain 109 237 IPR006671 -
Csa04g02456 385 MobiDBLite consensus disorder prediction 46 99 - -
Csa04g02456 385 CDD CYCLIN 141 230 IPR013763 -
Csa04g02456 385 PIRSF Cyclin_A_B_D_E 3 376 IPR039361 -
Csa04g02456 385 Pfam Cyclin, C-terminal domain 240 372 IPR004367 -
Csa04g02456 385 SUPERFAMILY Cyclin-like 98 237 IPR036915 -
Csa04g02456 385 SUPERFAMILY Cyclin-like 263 374 IPR036915 -
Csa04g02456 385 PANTHER CYCLINS 24 383 IPR039361 -
Csa04g02456 385 SMART Cyclin_C_2 240 372 IPR004367 -
Csa04g02456 385 Gene3D - 109 368 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01916 Csa04g02456 CCT
Csa02g01916 Csa04g02456 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02456 Csa-Chr4:24614388 Csa06g02128 Csa-Chr6:19014362 1.90E-100 dispersed
Csa02g01916 Csa-Chr2:18053116 Csa04g02456 Csa-Chr4:24614388 1.71E-148 wgd
Csa04g02456 Csa-Chr4:24614388 Csa07g00705 Csa-Chr7:5032351 1.70E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02456 K06627 - csv:101207493 705.671