Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02458 ATGGTGATCCCATTCCTACATCTTCTGATTTTATTCTTACTTCAAATCTTCACAAATCACTTCCTTCATAGAATCCGAAATCTCCCTCCCAGCCCATTTCTTTCTCTACCCATTATAGGCCAACTATACCTCCTTAAAACACCCCTCCACCGGACCTTATCGGAGATCTCCCGCCGTCATGGCCCAATCGTCTTCTTCCAATTCGGTTTCCGTTCAGTCCTGGTCGTTTCATCTCCGTCGGCCGCCGAGGACTGCCTATCCAAAAACGACGTCATCTTCGCCAACCGACCTCGTCTCGTTAGCGGCAAATACCTCGGGTACAATTACACAAGCCTCCTGTGGGCACCGTACGGCGAGCATTGGCGAAACCTCCGTCGAATCTCGTCGTTAGAAATCCTTTCCAGCCACCGCCTCCAAACGCTTTCAAGTATTCGCGTGGATGAAGTCCGTACGCTGATCCGGAGACTGTACAACGCTGAAAACGACGTCGTAGACATGAGAACAGAATTTTTCGAAGTGATGTTCAATATCACGATGAGAATGATCGCCGGAAAACGATATTACGGGGAAGATGTGGCAGCGTACTCGGAGGAGGCGGGGAGATTTCGAGAGATACAAGAGGAGACGTTTCGATTAAGCGGCAAGACTAATTTGGGGGACTTTTTAAGGGTTGTGAAATGGGTTGGATTATCTAAAGGGATTGAAAATAGATTGAGGGAGTTACAGATTAAGAGAGATGATTGGATGCAGAGTTTGATTGAAGAACATCGGAAGAAAATGAATAATGCTTATAGTTCTTCTTCTTCTATTCAAACTGATGCTAAAAAGACTATGATTGAGGTTCTCCTCTCATTGCAACAAAAGGAACCTCAGTATTATAAGGACGAGTATATCAGAGGCCTCATGCTCGTGTTGCTATTAGCTGGAACGGAAGGTTCCATCAATACAATGGAGTGGCTTCTATCACTATTACTCAACCACCCACACTCTCTTCAACGAGCCCAAATGGAAATCGACGACGTAGTTGGAAGAACTAATCGGCTCCTGGAGGAATCAGATCTAACCCACCTTCCTTACCTCCGTAGCCTGATCCACGAAACTCTTCGAATGTACCCGCCAGGCCCATTACTGATTCCACACGAATCGTCAGAGGATTGCCACGTTGGAGGGTTCCATGTCCCAGCTGGCACAATGTTATTCGTCAACGTATGGGCCATTCAAAACGACCCCACCGTATGGGTGGAGCCGAGGAAATTTAACCCAGATAGATTCGGAGGGGATGGAGAGGGGTTCAAATGGATGCCATTTGGGGCTGGGCGGAGGAGGTGTCCCGGCGAGGGCTTGGGGCTTCGCGTCATTGGATTGGTTGTAGGGTCGCTGATTCAATGCTTTGAATGGGAGTCAATGGACGGAGAATGTATTGATATGAGCGAAGGTGGTGGATTGACCTTGCCGAAAGCTCTCCCCCTTCGCACCCTTTGCCGGCCACGTTCAAATGCCACACATTTGCTTTCCCAAATCTAA 1524 48.1 MVIPFLHLLILFLLQIFTNHFLHRIRNLPPSPFLSLPIIGQLYLLKTPLHRTLSEISRRHGPIVFFQFGFRSVLVVSSPSAAEDCLSKNDVIFANRPRLVSGKYLGYNYTSLLWAPYGEHWRNLRRISSLEILSSHRLQTLSSIRVDEVRTLIRRLYNAENDVVDMRTEFFEVMFNITMRMIAGKRYYGEDVAAYSEEAGRFREIQEETFRLSGKTNLGDFLRVVKWVGLSKGIENRLRELQIKRDDWMQSLIEEHRKKMNNAYSSSSSIQTDAKKTMIEVLLSLQQKEPQYYKDEYIRGLMLVLLLAGTEGSINTMEWLLSLLLNHPHSLQRAQMEIDDVVGRTNRLLEESDLTHLPYLRSLIHETLRMYPPGPLLIPHESSEDCHVGGFHVPAGTMLFVNVWAIQNDPTVWVEPRKFNPDRFGGDGEGFKWMPFGAGRRRCPGEGLGLRVIGLVVGSLIQCFEWESMDGECIDMSEGGGLTLPKALPLRTLCRPRSNATHLLSQI* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24622685 24625421 + CsaV3_4G034840.1 Csa04g02458 528068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02458 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Csa04g02458 507 Gene3D Cytochrome P450 23 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PRINTS E-class P450 group I signature 173 191 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PANTHER CYTOCHROME P450 81E8 13 506 - -
Csa04g02458 507 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PRINTS P450 superfamily signature 443 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 Pfam Cytochrome P450 30 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02458 507 PANTHER CYTOCHROME P450 82C3-RELATED 13 506 - -
Csa04g02458 507 SUPERFAMILY Cytochrome P450 29 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02458 - - - csv:101207735 979.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01911 Csa-Chr2:18031935 Csa04g02458 Csa-Chr4:24622685 0 dispersed
Csa04g02458 Csa-Chr4:24622685 Csa04g02460 Csa-Chr4:24629124 0 dispersed
Csa04g02458 Csa-Chr4:24622685 Csa04g02459 Csa-Chr4:24625790 0 tandem
Csa04g01829 Csa-Chr4:17943184 Csa04g02458 Csa-Chr4:24622685 0 transposed
Csa04g02458 Csa-Chr4:24622685 Csa06g02977 Csa-Chr6:25728642 3.66E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g687 . . . . Bpe02g00445 . . . . . . . . . . . . . . . . . . . Cla08g01605 . . . . . . . . . . Lsi04g01506 Csa04g02458 . Cme03g02084 . . . . . . . . . . . . . . . . Cpe02g00207 . . . . . . . Cla05g02088 . . . . . . Lsi08g01509 . Chy07g00172 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000014 8 19 13 8 6 18 15 17 16 19 16 18 14 17 19 19 18 9 12 19 19 25 15 12 12 20 11 24 18 21 477
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02458 Csa_Chr04 FPKM 2.846958 2.974162 7.003046 7.512696 6.624509 5.664346 6.503442 0.0 0.057525 0.0