Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02459 ATGGGAGTCTTGGAGTCTATATTTGTATACATTCCACTATTCTTTGTGTTGTATACATTAATAGAGTACCTTATTCACAAGATCAGAAATCTTCCACCCACGCCTTTTCCTTTACTTCCGGTCATCGGCCATCTCCATCTCTTGAAGAATCCAATCTATCGGACTTTGGCGGAGATCTCAAACCACTATGGTCCGGTTGTGTATTTTCGGTTCGGCCAACGCCGAGTTCTTGTGGTATCGTCTCCTTTTGCGGCTGAAGAATGTCTAACCAAGAACGATATTGTGTTTGCGAACCGGCCTCGTCTCATTATATCCAAGTGGTTCGGATACAACAATACGAACCTTGTATGGTCTTCCTATGGGGACCACTGGCGTAACCTTCGCCGAATCTCCACCATTGAAATCTTGTCCACCCATCGCATTCAAATGCTCTCAATGTTCCGTCTCGAAGAGGTCAAATCTTTGATTCGAAGACTCGCAAATAATGAAAACCAAATTCATAACATGAAGAATGAGTTTTTTGATTTGACGTATAACGTGATGTTGAGAATGCTCGTCGGAAAGCGGTTTTATGGTGAGGATGTGGACGATGTAGACGAGGCAAAGATATTTAGGCAGTTACAAATCGATTTGGGTCAATTGGGTGGAAAGTCCATTTTACAAGATTTTATCCCATTCGTATCGTGGATGGGATTTGGTTCGACTATAGAAAATAAGATAATTGAATGCCATGTGAAAAGAGACACTTTTATGCAGAATTTGATTGATCAACATAAGAAAAGAATCGTTGATCAAAATAAATCTAATAACATATCTCAAGATGGAAGGAGGAAGACGATGATTGAAGTATTATTAGAACTACAACAGTACAATCCGGACCAATATACTGATGAAACTATTAGAGCCTTAATGCTGGTTTTGTTGGCTGCAGGTACAGAAACATCAGTTGCTGCAATGGAATGGGCTCTATCTCTTATGTTGAACCATCCCAAATTTTTAAAGAAACTACAAAATGAGATTGACAATCAAGTTGGCCATGACCGTTTGATTGACGAGTCTGACATGGCCAACCTTCCTAGTCTACGTGGCATCATCAATGAGACCTTACGAATGTATCCTCCGGCTCCATTAGTGGTACCACATGAATCATCAAAAGACTGTACTATTGGAGGATATCATATCCCACGTGGCACTATTTTGTTTGTGAATTTATGGGCCATTCACAACGACCCTAAGATATGGGATAATCCAAGAAAGTTCAATCCAAATAGGTTCGAGAGTTTAGAGAATGAAAAATTCGGGTTCAATCTAATACCATTCGGGTCAGGTAGAAGAGGGTGTCCAGGAGAAGGATTGGCTCTTCGAGTTATTGGGCTTGTATTGGGCGCATTGGTCCAATGTTTTGAATGGGAGCGTCCTGGGGAGGAGTTGGTGGATATGACCGAAGGTGTTGCACTCACTATGCCTAAGGCTCATTGCTTGCAAGCTAAATGTACGCCTCGACCCATTGTTCATCGTCTTCATCTATCTCATAAAGAATCCAACCCATGA 1551 41.39 MGVLESIFVYIPLFFVLYTLIEYLIHKIRNLPPTPFPLLPVIGHLHLLKNPIYRTLAEISNHYGPVVYFRFGQRRVLVVSSPFAAEECLTKNDIVFANRPRLIISKWFGYNNTNLVWSSYGDHWRNLRRISTIEILSTHRIQMLSMFRLEEVKSLIRRLANNENQIHNMKNEFFDLTYNVMLRMLVGKRFYGEDVDDVDEAKIFRQLQIDLGQLGGKSILQDFIPFVSWMGFGSTIENKIIECHVKRDTFMQNLIDQHKKRIVDQNKSNNISQDGRRKTMIEVLLELQQYNPDQYTDETIRALMLVLLAAGTETSVAAMEWALSLMLNHPKFLKKLQNEIDNQVGHDRLIDESDMANLPSLRGIINETLRMYPPAPLVVPHESSKDCTIGGYHIPRGTILFVNLWAIHNDPKIWDNPRKFNPNRFESLENEKFGFNLIPFGSGRRGCPGEGLALRVIGLVLGALVQCFEWERPGEELVDMTEGVALTMPKAHCLQAKCTPRPIVHRLHLSHKESNP* 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24625790 24627834 + CsaV3_4G034850.1 Csa04g02459 528069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02459 516 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 Coils Coil 152 172 - -
Csa04g02459 516 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 PRINTS P450 superfamily signature 447 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 Gene3D Cytochrome P450 25 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Csa04g02459 516 SUPERFAMILY Cytochrome P450 32 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 Pfam Cytochrome P450 33 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02459 516 PANTHER CYTOCHROME P450 82C3-RELATED 15 507 - -
Csa04g02459 516 PANTHER CYTOCHROME P450 81E8 15 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02459 - - - csv:101207981 1055.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02459 Csa-Chr4:24625790 Csa06g00756 Csa-Chr6:6111799 9.29E-167 dispersed
Csa04g02458 Csa-Chr4:24622685 Csa04g02459 Csa-Chr4:24625790 0 tandem
Csa04g02459 Csa-Chr4:24625790 Csa04g02460 Csa-Chr4:24629124 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g686 . . . . . . . Bma01g02256 . . . Cma09g00271 . . . Cpe06g00187 . Bhi04g00395 . . . . . Lcy13g2119 . . . . . . . . . . . . Csa04g02459 . . . . . . . . . . . . Cmo09g00267 . . . . . . Bhi09g03252 . . . . Mch11g0343 . . . . . . . . . . Chy07g00173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000014 8 19 13 8 6 18 15 17 16 19 16 18 14 17 19 19 18 9 12 19 19 25 15 12 12 20 11 24 18 21 477
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02459 Csa_Chr04 FPKM 0.0 1.869124 3.668231 2.640852 0.0 2.845417 2.432158 0.0 0.0 0.0