Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02460 ATGCTTAAGTCTCTGCTCCAATTTCTAACAGAAGCAATCTTCATAAGAACAGCCAAACTCAACCCCATGGCTATGGCTATGGCTATGACTATGGGAGCTATCTTTCTTTACATCCCTCCGTTTCTTGTCTTGTATTTATTAACAAAGCACTTCCTCCACAACATCAGAAACCTCCCACCCACCCCTTTCCCATCACTACCTATCCTTGGCCATCTCCACCTTTTGAACAAGCCCATATACCGCGCTCTGTACAACATCTCTAATCGCTATGGTCCGGTTGTGTTTCTCCGATTAGGATCTCGTTCGGTCTTGATCGTGTCGTCTCCTTCGGCAGCAGAAGAGTGTTTGACTAAGAACGACATCATCTTTGCAAATCGGCCTCATCTCCTATTATCAAAGTGCTTCGGATACAACAATACGAATCTCGTATGGTCATCTTATGGGGACCATTGGCGCAACCTCCGTCGAATCTGTACCGTTGAAATTTTGTCCACCCATCGCCTTCACATGCTTTATATTGTTCGTTTTGAAGAGGTTAGGTCATTGATTCAACGACTTGTGAAACGTGAAAACCAAGTAGTTAACATGAAACATGTGTTTTTTGATCTATCTTTCAACTTGATGTTGAGGATGATTGTTGGAAAACGATTTTATGGCGATGATGTAGACGATGTTGAAGAGGCAAAATTATTTAGGGAATTACAAGCTGAGTCAAGTCGGTTGTCTGGTAAATCTAATATGGGAGATTTTATTCCATTAATGTCATGGTTGGGATTTGATTCAACTTTGGAGAAAGAGATGATTGATTGTCAAAATGGAAGAGATGCTTTGATGCAAAGTTTAATCGAGCAACATCGAAGAAGAAGAATTGCGGAAATCGACTATTCTTTTCGTGATGGAAGGAAGAAGACATTGATTGAAGTATTATTAGAATTGCAAGAATCTGAACCTGAACAATATACCGATGAAACTATCAGAGCACTAATGCTACTTATGTTGGTAGCGGGTACAGAGACGTCAGGGAGCATAATGGAGTGGGCTTTGTCTCTTCTCTTAAACCATCCAGAAATTTTAAAGAAAGCACAAACTGAAATCGACAATCAAGTTGGACACAAACGTCTAATGGAAGAATCCGACATGGCACGTCTTCCTTACCTACGTGGCATCATCAACGAGACACTTCGGATGTACCCTCCAGCTCCATTGCTAGTACCTCATGAATCATCACAAGACTGCTCTGTTGGAGGCTACCACGTTCCACGTGGCACTATGTTATACATCAACATATGGGCCATTCAGAACGACCCCAAATTCTGGACCCACCCGAGAAAATTTGACCCAGAGAGATTTAACGACGTGGAAAGTGAAAATTACAAGTTCAATTTGATGGCATTTGGGTTGGGGAGGAGGGGGTGCCCAGGAGAGGGCTTGGGCCTACGAATGATTGGGCTTGTGTTGGGCTCGTTGATTCAATGCTTTGAATGGGAGCGTCCTACTGAGGAATTAGTGGATTTGACAGAAGGGATTGCAATCACTATGCCCAAAGCCCAAAATTTACATGCTAAATGTAGGCCCAGGCCCATGGTTGTTGATATTCTCTCACAAACTAAGTCTAGCCCGGCCCGTTGA 1629 42.91 MLKSLLQFLTEAIFIRTAKLNPMAMAMAMTMGAIFLYIPPFLVLYLLTKHFLHNIRNLPPTPFPSLPILGHLHLLNKPIYRALYNISNRYGPVVFLRLGSRSVLIVSSPSAAEECLTKNDIIFANRPHLLLSKCFGYNNTNLVWSSYGDHWRNLRRICTVEILSTHRLHMLYIVRFEEVRSLIQRLVKRENQVVNMKHVFFDLSFNLMLRMIVGKRFYGDDVDDVEEAKLFRELQAESSRLSGKSNMGDFIPLMSWLGFDSTLEKEMIDCQNGRDALMQSLIEQHRRRRIAEIDYSFRDGRKKTLIEVLLELQESEPEQYTDETIRALMLLMLVAGTETSGSIMEWALSLLLNHPEILKKAQTEIDNQVGHKRLMEESDMARLPYLRGIINETLRMYPPAPLLVPHESSQDCSVGGYHVPRGTMLYINIWAIQNDPKFWTHPRKFDPERFNDVESENYKFNLMAFGLGRRGCPGEGLGLRMIGLVLGSLIQCFEWERPTEELVDLTEGIAITMPKAQNLHAKCRPRPMVVDILSQTKSSPAR* 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24629124 24631635 + CsaV3_4G034860.1 Csa04g02460 528070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02460 542 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 PRINTS E-class P450 group I signature 111 132 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 PRINTS E-class P450 group I signature 324 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 PRINTS E-class P450 group I signature 344 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 PRINTS E-class P450 group I signature 387 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 PRINTS E-class P450 group I signature 428 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 PRINTS E-class P450 group I signature 462 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 PRINTS E-class P450 group I signature 472 495 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 Pfam Cytochrome P450 60 515 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 PRINTS P450 superfamily signature 335 352 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 PRINTS P450 superfamily signature 463 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 PRINTS P450 superfamily signature 472 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 SUPERFAMILY Cytochrome P450 59 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 Gene3D Cytochrome P450 53 534 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02460 542 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 465 474 IPR017972 GO:0005506|GO:0016705
Csa04g02460 542 PANTHER CYTOCHROME P450 82C3-RELATED 41 535 - -
Csa04g02460 542 PANTHER CYTOCHROME P450 81E8 41 535 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02460 - - - csv:101208224 1081.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01911 Csa04g02460 CCT
Csa02g01911 Csa04g02460 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01829 Csa-Chr4:17943184 Csa04g02460 Csa-Chr4:24629124 0 dispersed
Csa04g02458 Csa-Chr4:24622685 Csa04g02460 Csa-Chr4:24629124 0 dispersed
Csa04g02460 Csa-Chr4:24629124 Csa04g02453 Csa-Chr4:24601161 1.62E-168 dispersed
Csa04g02459 Csa-Chr4:24625790 Csa04g02460 Csa-Chr4:24629124 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g685 . . . . . . . . . . Cma01g01801 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01505 Csa04g02460 . . . . . . . . . . . . . . . . . . . Bhi09g03251 . . . . . . Cla05g02089 . . . . . . . Csa02g01911 Chy07g00174 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000014 8 19 13 8 6 18 15 17 16 19 16 18 14 17 19 19 18 9 12 19 19 25 15 12 12 20 11 24 18 21 477
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02460 Csa_Chr04 FPKM 14.934555 19.640039 13.235227 15.308764 9.790126 10.483849 10.678226 6.925198 7.726663 8.314361