Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02461 ATGAATTCATACTCTGCCACTCTCCTCTGTTCTCTACTTGGTTTTAATCTGCTAGCCGTGATTCTTTCCTCTTCTGTGGACTCGAGAGATTTTGACTATCAGCAACGGTCTGTCATTCTTCCTCTCTTTATCTCGCCCACGAATTCTTCTCATCGGCGCGTTTTGGACCGTGATCACCGTCTCCGGCACCTGCAGAACCTAGTCAAGCCCCACTCTTCAAATGCTCGAATGAGGCTCCACGATGATCTCCTTACCAACGGGTATTACACGACTCGTTTATGGATTGGGTCTCCTCCACAAGAATTTGCTCTTATTGTGGATACCGGAAGTACTGTGACATACGTTCCATGTTCTAACTGCGTACAGTGCGGGAATCATCAGGATCCAAGGTTCCAACCAGAGTTGTCTAGCACATATCAACCTGTTAAGTGCAATGCTGATTGTAACTGTGATGAGAACGGAGTCCAATGTACATACGAGAGAAGGTATGCAGAGATGAGTACTAGCAGCGGTGTGCTTGCTGAGGACGTCATGTCATTTGGAAAAGAAAGTGAACTTGTACCCCAGCGTGCTGTCTTTGGCTGTGAAACTATGGAAAGTGGTGATCTTTATACCCAACGTGCTGATGGGATTATGGGTTTGGGCCGTGGTACACTCAGTGTGATGGACCAACTCGTGGGCAAGGGTGTTGTGAGCAATTCATTTTCATTATGTTATGGAGGGATGGATGTTGGTGGGGGTGCAATGGTTCTTGGTGGGATCTCTTCACCCCCTGGTATGGTATTTTCCCACTCAGACCCATCTCGAAGCCCATATTATAATATAGAGTTGAAGGAAATACATGTTGCTGGGAAACCATTGAAGTTGAATCCGAGGACTTTTGATGGGAAGTATGGTGCTATCTTGGATAGTGGAACTACATATGCTTATTTTCCAGAAAAAGCCTACTATGCATTCAAGGATGCTATAATGAAGAAAATTAGTTTCCTGAAACAAATCAGTGGTCCTGACCCGAATTTCAAAGATATTTGTTTCTCTGGTGCTGGAAGGGATGTCACTGAACTTCCAAAAGTTTTTCCAGAGGTTGATATGGTTTTTGCCAATGGACAGAAAATTTCACTTTCTCCAGAGAACTACTTATTCCGGCATACGAAGGTTAGTGGTGCATATTGTCTGGGGATCTTTAAAAATGGGAATGATCAGACAACACTTTTGGGAGGAATTATTGTTCGCAATACTCTTGTCACTTATAACCGAGAGAACTCCACAATTGGGTTTTGGAAGACTAACTGTTCTGAGCTGTGGAAGAATCTGCATTATCTTTCTCCTGCTCCTCCACCTGCTCCTTTACCTTCCCATGTTCCGAATACGAGTAAAGAAGTTCCTCCACCTGGTTCTCCAAGTGTGCCATTTCTTTCTGGTGAATTTCAGGTTGGAGTGATAACATTTAATATGATGCTTCATGTCAACCAATCCTCCGTGAAGCTTAACATCACTGAGCTTGCAGAATTTATTGCCAATGAACTTGAAGTTAGTGTCTCACAGGTTCACGTGCTGAACTTTACGTCAGGGGAAACTGATATCTTCATTAGATGGGCTATCTTCCCTGCTGACTCGGCTGGTTATATATCTAATTCCACGGCGATGGACATAATTTCTCGCTTGAAGGAACATGAATTGCAACTTCCTGAAAAATTCGGAAGTTATCAGCTGGTTGAATTGAATGTTGAACCCCCGTTAAAGAAGACATGGATGGAGCAACACTTCTGGTCTATAACGACTATTGGAGTAGCAGTTACCTTAGTTGTTGGATTGGCTGCCGGAAGCACATGGTTGATTTGGAGATATAGACGGAGGGACACGAGTTCCTATGAGCCTGTTGGCGTAGTAGGGCCCGAGCAAGAGCTTCAGCCGCTATAG 1920 44.22 MNSYSATLLCSLLGFNLLAVILSSSVDSRDFDYQQRSVILPLFISPTNSSHRRVLDRDHRLRHLQNLVKPHSSNARMRLHDDLLTNGYYTTRLWIGSPPQEFALIVDTGSTVTYVPCSNCVQCGNHQDPRFQPELSSTYQPVKCNADCNCDENGVQCTYERRYAEMSTSSGVLAEDVMSFGKESELVPQRAVFGCETMESGDLYTQRADGIMGLGRGTLSVMDQLVGKGVVSNSFSLCYGGMDVGGGAMVLGGISSPPGMVFSHSDPSRSPYYNIELKEIHVAGKPLKLNPRTFDGKYGAILDSGTTYAYFPEKAYYAFKDAIMKKISFLKQISGPDPNFKDICFSGAGRDVTELPKVFPEVDMVFANGQKISLSPENYLFRHTKVSGAYCLGIFKNGNDQTTLLGGIIVRNTLVTYNRENSTIGFWKTNCSELWKNLHYLSPAPPPAPLPSHVPNTSKEVPPPGSPSVPFLSGEFQVGVITFNMMLHVNQSSVKLNITELAEFIANELEVSVSQVHVLNFTSGETDIFIRWAIFPADSAGYISNSTAMDIISRLKEHELQLPEKFGSYQLVELNVEPPLKKTWMEQHFWSITTIGVAVTLVVGLAAGSTWLIWRYRRRDTSSYEPVGVVGPEQELQPL* 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24631991 24638912 + CsaV3_4G034870.1 Csa04g02461 528071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02461 639 Pfam Xylanase inhibitor N-terminal 89 253 IPR032861 -
Csa04g02461 639 SUPERFAMILY Acid proteases 85 436 IPR021109 -
Csa04g02461 639 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 104 115 IPR001969 GO:0004190|GO:0006508
Csa04g02461 639 ProSiteProfiles Peptidase family A1 domain profile. 89 427 IPR033121 -
Csa04g02461 639 Gene3D Acid Proteases 70 252 IPR021109 -
Csa04g02461 639 PANTHER ASPARTYL PROTEASES 21 477 IPR001461 GO:0004190|GO:0006508
Csa04g02461 639 Pfam Xylanase inhibitor C-terminal 273 426 IPR032799 -
Csa04g02461 639 PRINTS Pepsin (A1) aspartic protease family signature 95 115 IPR001461 GO:0004190|GO:0006508
Csa04g02461 639 PRINTS Pepsin (A1) aspartic protease family signature 300 311 IPR001461 GO:0004190|GO:0006508
Csa04g02461 639 PRINTS Pepsin (A1) aspartic protease family signature 403 418 IPR001461 GO:0004190|GO:0006508
Csa04g02461 639 Gene3D Acid Proteases 261 436 IPR021109 -
Csa04g02461 639 CDD pepsin_A_like_plant 88 431 IPR034161 -
Csa04g02461 639 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 21 477 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02461 - - - csv:101208466 1271.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01060 Csa-Chr1:6601330 Csa04g02461 Csa-Chr4:24631991 5.99E-12 dispersed
Csa02g01445 Csa-Chr2:13841190 Csa04g02461 Csa-Chr4:24631991 0 dispersed
Csa04g02461 Csa-Chr4:24631991 Csa04g02097 Csa-Chr4:21499124 3.19E-38 dispersed
Csa04g02461 Csa-Chr4:24631991 Csa06g01256 Csa-Chr6:10534832 1.20E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g682 . Blo12g00980 . Bda03g00191 . Bpe04g00164 . . . . . Cma09g00272 . . . . . . . . . . . . . . . . . . . . . Cone17ag0871 Cone20ag0219 . Csa04g02461 . . . . . . . . . . . . Cmo09g00268 . . . Car09g00227 . . Bhi09g03250 . . . Hepe01g1811 Mch11g0344 . Cla05g02090 . . . . . . . . Chy07g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002183 1 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 3 2 2 2 2 1 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02461 Csa_Chr04 FPKM 85.415077 84.471039 84.963905 87.005508 114.315048 119.272209 111.761787 83.479675 85.598839 88.625015
Csa04g02461 Csa_Chr09 FPKM 137.164307 154.473282 118.500755 118.717278 189.496536 187.680237 179.401642 187.908356 190.841995 194.474213