Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02466 ATGGTAGCTGCTGTATCAACGACGATAAACTCCAAGACTGCCCCTCAGAAAGGGCCTCCTCCTCATCTTCATCCTACGCGACACAATTCGAACAGGCTTCCTTTATTTCCATCTGAGTCCGACAATGCAATCCATCCACGCAAGCCCAAATCGCGGGAGGTTACTTCTCGATTTATGCCTCCATCCAACTCATCTTCCTCGCCCTTGCTTACGAAACGTTCTTCTTCTCCTTCACTCTCTAGAACTTCCAGTTTAGCTGCTACGCCGACGCAGGCTGCTTCGTCTCTCAATAAGCGTTCTACATCGGTGGACCGCAGGAGAGTTGGGACTCCTAGGCCTTACTCTCTTGATTTCAGGACTGGGTTTGATAATGGTGGACTGGGGGAGATGCCTGCCTCTCAGAAGTTATTGCTTACTTCTACGAGAAGCTTATCTGTTTCATTCCAGGGTGAGTCTTTCTCTTTGCAAGTTAGTAAGGCGAAACCAGCTCCTTCACCAGGTGCCAGGAAGGGTACGCCTGAACGCAGGAAGTCGACGACGCCAGCGAGAGGAGGCGGTGTTGCGGACAAAGCAGAGAACTCAAAGCTAATTGTAGATCAGCATAGATGGCCAGCGAGGTTGCGGCAGGAAAATTTGATGACCAGGAGTTTGGATTGTGAGGACATGGCCGAGAGGAGGAGAGTTAGTGGTGGATCTGTGAATGTCATTAGGCAGTTGCAGGATTCAAAGGCTCAGGGTAGGGCTTCTTTTGATGGGGTTTTGAGCTCGGATTCTGTAACTGCGGGAATGGAGAAAGCGGATGAACTTGTTGTGGACGCAAATTCAGAAAATTTATCTGATCATTCTAATGTACTTTCGTCTGATTCGGATAGCGTCTCTTCAGGTAGCAATTGCGGAACTCAAGATTACAGTCCTAACGAAGGACAGGGGCAGCGTGGACCTCGAGGAATTGTAGTGCCAGCAAGATTTTGGCAGGAGACAAACAACAGGTTGCGGCGCCAGCCGGAAAACGGCTCGCCTTTGTCAAAAAACGTTGGGGCAAGAAGTTTAGCTCCTTCAAAGCTTACCGTGACAAAGAAGTTTGCAATGGATAGTCCTACATCAACTCCACGGGAAATTGCCAACAGTAGAGGTCAATTGTCTCCCATTCGCGGTTCACTTAGGCCTATGTCACCAAGTAGGCTGTTAGCATCGTCCACAGGACCTCGGTTGAGGAATTCTGTGGGGAGTACACCTCTTAATAGTTTGAACAGCATTCCATTATCAATGACAAGTTTTGTTGCTGATGCCCGAAGGGGGAAGATTGCGGAGAACCGAATTGTAGATGCACACTCATTGAGGCTTTTACATAATCGGCTACTGCAATGGCGTTTTGCCAATGCCCGAGCAGATGCTGCACAATCCGGCCTCAGTTTGAATGCAGAGAGAAGCCTCTATAACGCTTGGCTGAGTACTTCAAAGCTGCGTGAATCTGTTAGAACAAAAAGATCAGAGTTACAGTTACTCAAGCAAAAACTAACGTTAACCACCATCCTCAGCTGGCAAATGTTGCATTTGGAAGAATGGGATGAACTGGATCAAGACTTTTCCAACAGTTTATCAGGTGTTACCGAAGCTTTGAGGGCTAGCACCCTTCGCCTGCCAGTTGTTGGATCGGCAAAGGCGGATGTCCAAGGTATTAAGGACGCCATTTCCTCTGCCGTTGATGTGCTGCAGACAATGGCATCATCCATTTGTTTTCTATTATCAAAGGTTGGAAAAGTAAACTCTCTTGTTTCTGAGCTTGCGAATGTGAGTGCAAAGGAATGTGCTTTGCTTGAGCGGGTAAAATGTCTGTTGTCTGCAATTGCCGTACTACAGGTGAAAGAGTGTAGTCTGCGTACGCAAATTTTACAGCGGAGATACGTACCTTCAACCTGA 1920 47.81 MVAAVSTTINSKTAPQKGPPPHLHPTRHNSNRLPLFPSESDNAIHPRKPKSREVTSRFMPPSNSSSSPLLTKRSSSPSLSRTSSLAATPTQAASSLNKRSTSVDRRRVGTPRPYSLDFRTGFDNGGLGEMPASQKLLLTSTRSLSVSFQGESFSLQVSKAKPAPSPGARKGTPERRKSTTPARGGGVADKAENSKLIVDQHRWPARLRQENLMTRSLDCEDMAERRRVSGGSVNVIRQLQDSKAQGRASFDGVLSSDSVTAGMEKADELVVDANSENLSDHSNVLSSDSDSVSSGSNCGTQDYSPNEGQGQRGPRGIVVPARFWQETNNRLRRQPENGSPLSKNVGARSLAPSKLTVTKKFAMDSPTSTPREIANSRGQLSPIRGSLRPMSPSRLLASSTGPRLRNSVGSTPLNSLNSIPLSMTSFVADARRGKIAENRIVDAHSLRLLHNRLLQWRFANARADAAQSGLSLNAERSLYNAWLSTSKLRESVRTKRSELQLLKQKLTLTTILSWQMLHLEEWDELDQDFSNSLSGVTEALRASTLRLPVVGSAKADVQGIKDAISSAVDVLQTMASSICFLLSKVGKVNSLVSELANVSAKECALLERVKCLLSAIAVLQVKECSLRTQILQRRYVPST* 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24665018 24672848 + CsaV3_4G034920.1 Csa04g02466 528076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02466 639 MobiDBLite consensus disorder prediction 362 382 - -
Csa04g02466 639 MobiDBLite consensus disorder prediction 1 15 - -
Csa04g02466 639 MobiDBLite consensus disorder prediction 155 195 - -
Csa04g02466 639 MobiDBLite consensus disorder prediction 1 127 - -
Csa04g02466 639 MobiDBLite consensus disorder prediction 56 99 - -
Csa04g02466 639 MobiDBLite consensus disorder prediction 392 409 - -
Csa04g02466 639 Pfam QWRF family 293 607 IPR007573 -
Csa04g02466 639 PANTHER AUGMIN FAMILY MEMBER 1 639 - -
Csa04g02466 639 MobiDBLite consensus disorder prediction 279 315 - -
Csa04g02466 639 PANTHER QWRF MOTIF-CONTAINING PROTEIN 9 1 639 - -
Csa04g02466 639 MobiDBLite consensus disorder prediction 279 308 - -
Csa04g02466 639 MobiDBLite consensus disorder prediction 362 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02466 - - - csv:101208707 1154.04
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01902 Csa04g02466 CCT
Csa02g01902 Csa04g02466 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02466 Csa-Chr4:24665018 Csa06g01049 Csa-Chr6:8584993 7.86E-31 dispersed
Csa02g01902 Csa-Chr2:17987377 Csa04g02466 Csa-Chr4:24665018 0 wgd
Csa04g02466 Csa-Chr4:24665018 Csa07g00691 Csa-Chr7:4950201 5.64E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g663 . . . . . . . . Cmo05g00149 Cmo12g00532 . Cma09g00280 . Car12g00536 Sed05g2623 Cpe06g00192 Cpe07g00513 Bhi04g00407 Tan02g1017 Cmetu01g0451 . Hepe08g1326 . Lcy13g2128 Cla08g01614 Cam08g2116 Cec08g1701 Cco08g1824 Clacu08g1801 . Cre08g1583 . . Cone17ag0882 Cone20ag0228 Lsi04g01495 Csa04g02466 . Cme03g02095 Blo17g00863 . . . . Bpe05g00386 . Bma05g00054 . . Cmo09g00274 Cma12g00592 Cma05g00148 Car05g00128 Car09g00236 Cpe11g00126 . Bhi09g03240 . . . Hepe01g1820 Mch11g0354 . Cla05g02098 Cam05g2251 Cec05g2270 Cco05g2312 Clacu05g2247 Cmu05g2110 Cre05g2233 Lsi08g01518 Csa02g01902 Chy07g00180 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012087 0 2 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02466 Csa_Chr04 FPKM 3.242929 4.003827 0.0 0.0 0.0 0.101037 0.07763 0.042518 0.0 0.075926