Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02468 | ATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGCTGCAGCGAAGCTTGCGTTTTAAGGTCTAGTCTTCATTGGATTGATTCTCCCGAAGCTCAAGGCAACGCTACTCTGTTTCTTGCTAAGTTTTTTGGCCGTAGTGATCTTTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCTGCTTTGTTTCAGTCTCTGTTATTCGAAGCCTGTGGTCGCACAGTTAACCCAGTTAGCGGCGCCGTTGGTCTATTGTCTACTGGGAACTGGCACGTCTGTCAGGCGGCGGCGGATACTATTCTCAACGGCGGGGTTCTCCGACCAATACCCGGAATCGAAATTTCTGCCAATCCCACGCCTAACCTTGATGATTCATCGCTTACTTTTAATACCGATGTCTGGACAACCACCACGGTACACAATCTTCAATTTTACCCATCTACTCCGTCTGATTTCCGGTGCCTTCCTGATCTCAGTCTCGGCAGAGCGAAGAATCATCATCCGTTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACTAGCTTCGGAAGCGGCGATCTTGGCGACCAACGGAAAGAAACGAAGCTTTTGAACTTATTCGTGTGA | 618 | 49.19 | MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPTPNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEESVMTSFGSGDLGDQRKETKLLNLFV* | 206 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24675485 | 24677384 | - | CsaV3_4G034940.1 | Csa04g02468 | 528078 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02468 | 205 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - | |
Csa04g02468 | 205 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 99 | IPR004883 | - | |
Csa04g02468 | 205 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 205 | - | - | |
Csa04g02468 | 205 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 39-LIKE | 1 | 205 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g02468 | Csa-Chr4:24675485 | Csa05g02614 | Csa-Chr5:27325928 | 2.79E-46 | dispersed | |
Csa04g02468 | Csa-Chr4:24675485 | Csa06g03011 | Csa-Chr6:25950641 | 6.36E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31623 | PF03195 | LOB | 1.50E-23 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02468 | - | - | csv:101208953 | 414.075 |