Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02468 ATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGCTGCAGCGAAGCTTGCGTTTTAAGGTCTAGTCTTCATTGGATTGATTCTCCCGAAGCTCAAGGCAACGCTACTCTGTTTCTTGCTAAGTTTTTTGGCCGTAGTGATCTTTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCTGCTTTGTTTCAGTCTCTGTTATTCGAAGCCTGTGGTCGCACAGTTAACCCAGTTAGCGGCGCCGTTGGTCTATTGTCTACTGGGAACTGGCACGTCTGTCAGGCGGCGGCGGATACTATTCTCAACGGCGGGGTTCTCCGACCAATACCCGGAATCGAAATTTCTGCCAATCCCACGCCTAACCTTGATGATTCATCGCTTACTTTTAATACCGATGTCTGGACAACCACCACGGTACACAATCTTCAATTTTACCCATCTACTCCGTCTGATTTCCGGTGCCTTCCTGATCTCAGTCTCGGCAGAGCGAAGAATCATCATCCGTTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACTAGCTTCGGAAGCGGCGATCTTGGCGACCAACGGAAAGAAACGAAGCTTTTGAACTTATTCGTGTGA 618 49.19 MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPTPNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNHHPLENRRSLDSEESVMTSFGSGDLGDQRKETKLLNLFV* 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24675485 24677384 - CsaV3_4G034940.1 Csa04g02468 528078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02468 205 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Csa04g02468 205 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Csa04g02468 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 205 - -
Csa04g02468 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02468 Csa-Chr4:24675485 Csa05g02614 Csa-Chr5:27325928 2.79E-46 dispersed
Csa04g02468 Csa-Chr4:24675485 Csa06g03011 Csa-Chr6:25950641 6.36E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31623 PF03195 LOB 1.50E-23 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02468 - - csv:101208953 414.075