Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02471 ATGGCTCTTGAAGCTCTGAATTCTCCTACAACTCCATCACCAGCTCTTCACTACGACGACCCAAACCTCAATTCATTTGAGTCTTGGTCTAAGCGGAAGAGAACTAAGCGTCCACGTGGATTTGATAACCCTCCTACTGAGGAAGAGTATTTAGCCTTATGTCTCATCATGCTTGCTCGTGGTGGCGCAACCGCTAATTCTGATTCTGATCACCCACTTGACTATGAAGTTCCAATTCCTGCTCAACCCATATCTGTTGTTAAACTTAGTTACAAGTGCTCTGTTTGTGACAAAGCTTTTTCGTCTTATCAAGCTTTGGGTGGACATAAAGCTAGCCACAGAAAGTCAGCTACAGGAGAAGATCAATCCACTTCCTCCACCACAACTACTTCCGCCACCGCTACTGCCACCGCCACCGTCGCTGGAGCTAAATCCCACCAGTGCTCTATTTGTCACAAGTCTTTTCCCACCGGTCAAGCCTTAGGCGGTCACAAACGTTGCCACTACGACGGCGGACTCAGTAACAACAACAATCACACGCAGAGTCATCCTAACAACAACAACAACAACAACAACGCCGCCACTGCGCCGGTGACATCGTCCGAAGGAGTTGGGTCTACTCACACACAGAGTCACAGCCACCGTGACTTTGACCTTAACCTCCCAGCCTTGCCGGAGTTATCACCGGGATTCTTTATCTCTGCCGGGGACGACGAGGTTCAAAGCCCATTACCTCTGAAGAAGCCTCGTATATTAACAATTCCTAAAATTGAGATTTCTCAAAATTAA 789 47.78 MALEALNSPTTPSPALHYDDPNLNSFESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATANSDSDHPLDYEVPIPAQPISVVKLSYKCSVCDKAFSSYQALGGHKASHRKSATGEDQSTSSTTTTSATATATATVAGAKSHQCSICHKSFPTGQALGGHKRCHYDGGLSNNNNHTQSHPNNNNNNNNAATAPVTSSEGVGSTHTQSHSHRDFDLNLPALPELSPGFFISAGDDEVQSPLPLKKPRILTIPKIEISQN* 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24686908 24687696 - CsaV3_4G034970.1 Csa04g02471 528081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02471 262 PANTHER ZINC FINGER PROTEIN ZAT10 1 254 - -
Csa04g02471 262 MobiDBLite consensus disorder prediction 172 208 - -
Csa04g02471 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Csa04g02471 262 SUPERFAMILY beta-beta-alpha zinc fingers 91 168 IPR036236 -
Csa04g02471 262 SMART c2h2final6 146 168 IPR013087 -
Csa04g02471 262 SMART c2h2final6 91 113 IPR013087 -
Csa04g02471 262 MobiDBLite consensus disorder prediction 1 18 - -
Csa04g02471 262 MobiDBLite consensus disorder prediction 172 221 - -
Csa04g02471 262 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 254 IPR044653 GO:0003700
Csa04g02471 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 168 IPR013087 -
Csa04g02471 262 Pfam C2H2-type zinc finger 91 115 - -
Csa04g02471 262 Pfam C2H2-type zinc finger 146 170 - -
Csa04g02471 262 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Csa04g02471 262 MobiDBLite consensus disorder prediction 108 131 - -
Csa04g02471 262 MobiDBLite consensus disorder prediction 1 44 - -
Csa04g02471 262 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Csa04g02471 262 Gene3D Classic Zinc Finger 89 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02471 Csa-Chr4:24686908 Csa03g00737 Csa-Chr3:6573164 2.94E-17 dispersed
Csa02g01901 Csa-Chr2:17985660 Csa04g02471 Csa-Chr4:24686908 3.04E-80 wgd
Csa04g02471 Csa-Chr4:24686908 Csa07g00690 Csa-Chr7:4943937 2.50E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31624 PF13912 zf-C2H2_6 2.00E-11 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02471 - - csv:101221218 476.478