Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02471 | ATGGCTCTTGAAGCTCTGAATTCTCCTACAACTCCATCACCAGCTCTTCACTACGACGACCCAAACCTCAATTCATTTGAGTCTTGGTCTAAGCGGAAGAGAACTAAGCGTCCACGTGGATTTGATAACCCTCCTACTGAGGAAGAGTATTTAGCCTTATGTCTCATCATGCTTGCTCGTGGTGGCGCAACCGCTAATTCTGATTCTGATCACCCACTTGACTATGAAGTTCCAATTCCTGCTCAACCCATATCTGTTGTTAAACTTAGTTACAAGTGCTCTGTTTGTGACAAAGCTTTTTCGTCTTATCAAGCTTTGGGTGGACATAAAGCTAGCCACAGAAAGTCAGCTACAGGAGAAGATCAATCCACTTCCTCCACCACAACTACTTCCGCCACCGCTACTGCCACCGCCACCGTCGCTGGAGCTAAATCCCACCAGTGCTCTATTTGTCACAAGTCTTTTCCCACCGGTCAAGCCTTAGGCGGTCACAAACGTTGCCACTACGACGGCGGACTCAGTAACAACAACAATCACACGCAGAGTCATCCTAACAACAACAACAACAACAACAACGCCGCCACTGCGCCGGTGACATCGTCCGAAGGAGTTGGGTCTACTCACACACAGAGTCACAGCCACCGTGACTTTGACCTTAACCTCCCAGCCTTGCCGGAGTTATCACCGGGATTCTTTATCTCTGCCGGGGACGACGAGGTTCAAAGCCCATTACCTCTGAAGAAGCCTCGTATATTAACAATTCCTAAAATTGAGATTTCTCAAAATTAA | 789 | 47.78 | MALEALNSPTTPSPALHYDDPNLNSFESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATANSDSDHPLDYEVPIPAQPISVVKLSYKCSVCDKAFSSYQALGGHKASHRKSATGEDQSTSSTTTTSATATATATVAGAKSHQCSICHKSFPTGQALGGHKRCHYDGGLSNNNNHTQSHPNNNNNNNNAATAPVTSSEGVGSTHTQSHSHRDFDLNLPALPELSPGFFISAGDDEVQSPLPLKKPRILTIPKIEISQN* | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24686908 | 24687696 | - | CsaV3_4G034970.1 | Csa04g02471 | 528081 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02471 | 262 | PANTHER | ZINC FINGER PROTEIN ZAT10 | 1 | 254 | - | - | |
Csa04g02471 | 262 | MobiDBLite | consensus disorder prediction | 172 | 208 | - | - | |
Csa04g02471 | 262 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 91 | 118 | IPR013087 | - | |
Csa04g02471 | 262 | SUPERFAMILY | beta-beta-alpha zinc fingers | 91 | 168 | IPR036236 | - | |
Csa04g02471 | 262 | SMART | c2h2final6 | 146 | 168 | IPR013087 | - | |
Csa04g02471 | 262 | SMART | c2h2final6 | 91 | 113 | IPR013087 | - | |
Csa04g02471 | 262 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Csa04g02471 | 262 | MobiDBLite | consensus disorder prediction | 172 | 221 | - | - | |
Csa04g02471 | 262 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 1 | 254 | IPR044653 | GO:0003700 | |
Csa04g02471 | 262 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 146 | 168 | IPR013087 | - | |
Csa04g02471 | 262 | Pfam | C2H2-type zinc finger | 91 | 115 | - | - | |
Csa04g02471 | 262 | Pfam | C2H2-type zinc finger | 146 | 170 | - | - | |
Csa04g02471 | 262 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 93 | 113 | IPR013087 | - | |
Csa04g02471 | 262 | MobiDBLite | consensus disorder prediction | 108 | 131 | - | - | |
Csa04g02471 | 262 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Csa04g02471 | 262 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 148 | 168 | IPR013087 | - | |
Csa04g02471 | 262 | Gene3D | Classic Zinc Finger | 89 | 168 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g02471 | Csa-Chr4:24686908 | Csa03g00737 | Csa-Chr3:6573164 | 2.94E-17 | dispersed | |
Csa02g01901 | Csa-Chr2:17985660 | Csa04g02471 | Csa-Chr4:24686908 | 3.04E-80 | wgd | |
Csa04g02471 | Csa-Chr4:24686908 | Csa07g00690 | Csa-Chr7:4943937 | 2.50E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31624 | PF13912 | zf-C2H2_6 | 2.00E-11 | CL0361 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02471 | - | - | csv:101221218 | 476.478 |