Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02472 ATGTCCATGTCAATTATTGATGAAGATAACAACAATTTGGAGTCCATTTTCTCAGCCTCTAGTACTGAATTTTTGCTGCAAGAAATCAGTAGTACTGGGTTTTCTGAAGATCACAAATTTCTTAACATGGATATTGTTCAAACCCATCTAGGAGATGAAGATGATGATAATCCCTTATTCCATCACAAAAGGAAATCATCCATTGTTGCTCCTGATGATCATGATCATGATCAGAACCAGCTCATCAAACCCAATAAGAAAATTCGCACTTCAAATAATGTACAGATCAAAAGTAGGAAAGGCACAGAATCAAGTGGCAATAGCAAAAAAGTGAGCAGTACACGGCGACGGAAATGTGAAGAAGAACAAGAAAATGGAAGGTCGTCGTGTGATATGAACAGTTGCAGCAGCGATAACTCATCGGAGGATGACAATAACAATGCTTCACCAAAACCCAAAACTAGAGCCACTAGAGGCTCAGCAACTGATCCACAAAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAACGCCTTAGAATTCTGCAGAAACTTGTCCCTAATGGAACAAAGGTTGATATTAGCACAATGCTTGAGGAAGCAGTTCATTATGTTAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGATTTGTGGATGTATGCACCAATTGCTTACAATGGGATGGATATTGGTCTGCAGCAGAAGCTTTCTTCAATTTTATGA 735 38.91 MSMSIIDEDNNNLESIFSASSTEFLLQEISSTGFSEDHKFLNMDIVQTHLGDEDDDNPLFHHKRKSSIVAPDDHDHDQNQLIKPNKKIRTSNNVQIKSRKGTESSGNSKKVSSTRRRKCEEEQENGRSSCDMNSCSSDNSSEDDNNNASPKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLQQKLSSIL* 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24696914 24698535 + CsaV3_4G034980.1 Csa04g02472 528082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02472 244 MobiDBLite consensus disorder prediction 113 127 - -
Csa04g02472 244 Gene3D - 162 218 IPR036638 GO:0046983
Csa04g02472 244 MobiDBLite consensus disorder prediction 67 83 - -
Csa04g02472 244 MobiDBLite consensus disorder prediction 128 164 - -
Csa04g02472 244 SMART finulus 166 215 IPR011598 GO:0046983
Csa04g02472 244 Pfam Helix-loop-helix DNA-binding domain 170 210 IPR011598 GO:0046983
Csa04g02472 244 PANTHER TRANSCRIPTION FACTOR BHLH54 15 242 - -
Csa04g02472 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 226 IPR036638 GO:0046983
Csa04g02472 244 MobiDBLite consensus disorder prediction 67 167 - -
Csa04g02472 244 CDD bHLH_AtIND_like 161 223 - -
Csa04g02472 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Csa04g02472 244 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 242 - -
Csa04g02472 244 MobiDBLite consensus disorder prediction 84 109 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01899 Csa04g02472 CCT
Csa02g01899 Csa04g02472 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02472 Csa-Chr4:24696914 Csa02g00267 Csa-Chr2:1833037 2.64E-20 dispersed
Csa05g01584 Csa-Chr5:18711066 Csa04g02472 Csa-Chr4:24696914 6.18E-27 transposed
Csa02g01899 Csa-Chr2:17969523 Csa04g02472 Csa-Chr4:24696914 3.07E-62 wgd
Csa04g00038 Csa-Chr4:228607 Csa04g02472 Csa-Chr4:24696914 1.36E-57 wgd
Csa04g02472 Csa-Chr4:24696914 Csa07g00687 Csa-Chr7:4913547 1.05E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31625 PF00010 HLH 6.30E-09 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02472 - - csv:101209196 448.358