Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02473 ATGGCCTCCGCGGAGCAGCCTCTCAAGAAGCGGCGAAACTACGGACCAGCAGCTCCAGAACCATCGCCCCCACTTCCCCAGTTGCCTCAGCCACCGCCACCGCAAATTCCAGCGACGGACCAGACTTCCATCGCTCCATCGCCTCCCACTCCACCTCAGCTCTCCCAAGCCGAAATTCTCCTCAGGAGAAGGAACAGAGATGAAATTAGAAGCGTCTATGAATGTTTTAAGCGAATTAGGTTTTTCCTTTCCCAGAAAGAGAAGGGCGCTCCCACACCTGATATTGAGCAGGCTTATCTTTCTCTCATCACTGCTTCGAGAGGGTGCACCAGTGTGAAGCGTATTGTGGCTGACTTTATTCCTCGATACGCGCCTCATTGTCCGACTGCTCTTGAAGCTGCGACAAAAGTTATCATCAATATGCACAATCAGAGCTTGGGAATAATAAGTAATGGGGAGGATGTTGATAATGTTGCGTTTGAGACAGCAAGGGCTTGTATTATTGGTTTAGTTGATATTTGTGCTGCTGTCATGTCTAAGGCATCTACATCATCTGTCATCAGAGGCATTTGCTTTGAAGTTTTTCAGAATGTTTTCACCTTTTTTGTGTCATCTTTTGAGGGAAAAGATATATTTCAGATTGTAGATAAAGAAGCTCTTAGACTTCAAGATTCTGCAGATGTTTTCACTGAGTTAAAGCAGAAGTATACTGATGAAAATATTTTGCCTGTGATTAAACTTTCCAAGTTACGTGCTATCAGTCTCCTCTGGCTATTTTTCCATTACCCTAAAAATTTAGCTGCAGCTTGCTTTGAGTTTTTCAACATGGCTGCCGAGGGAATTCACAAGGACGGGCAGTATTTTCTAAATCAGATTGTGCTTGGGCTGGATGTTGACATCACCCATCATTTGGATAAAAGAAGTGAGAACCAGACAAGCCCAAAATACTGCAAGGATGATGCTAAGGAACAAGTTTCAGTCAGTAGTCACTTCTCCGGTGATGCATCATCTGTTTCAAGAAACTGCATGCTGAGCTTGGTTATGGGGAAAGATCAATCATTTCGAAACTGGATGGTTACACAGTATAAGAGGCTTCGTGATCTGCCGTCCTTTAGAGCTTTAGCAGACATAGCATCTTCTCTGGAGGGAATTTTTGAATCATTTTCTGAGTTAATGAACAATGAAGATACTCAAGTAAATATAGATGAGGAAATGTCTGATTCCTTGAAGCATTCTACTCGTAATAGAGGTGAAATTTCCATTGAACTATCTGATAAAAGGAGAAAATTGAGACATTGTGATTCCCTTGAAGATGGTTTCAATAATAAAGTGACTGGTCAGCATTTTTCGTCAATTCCTATTGATTGCAAGCACACCACGTGTTCTGATTTTGATACTGGCAGCTTGAGATCCATGGCATTTGATGTTCAGGAGCCTGGAGGTTTGCTACATGGAAGTTTGCCCCAGTCACTGGATCCTTTGAGCAAGCACGATCATTTGTCTTATGCAAAAACATCATTAGACCTGCAGCACAATTCTTTTGAATGTACAAAGCATTCAATTGATGGGAATCAAGTTTCAGGTGTTGACCACAATTTTCCTGCTCAGAGATTGTCTTCTGGAGATATCAATAATGATCTTGTGCCTCCTAGGCATCAACTATCGGTGCCATGTAGTTCTACAACTTGTCAGAGTTCGTGGTTTTCTGATGGAGATTCATCAGCCATGGATATATTTTCTGCTTCCAAACAGCTATGGGTGGGCCTTTTAGGCCCTGAGGTTTCTGAAGGTCACATAAGGTATCAATTTGAGAGGTTTGGTTACATTGGACATTTCTTCTTCTTTCCATTAAAAAGGTTTGCAGTGGTGGAATATGGTCACATCATTGATGCCATAAGGGCACGTGAATATATGCGTGGACAATTTCAGTGGTGTGTAAAATTCATGGATATTGGTTTAGGAACTAGGGGTTCCACTCACGGGGTTGCAATTGGTTCCAGTTCGCATGTATATGTTGGAAATGTTTTGAGCTACTGGGTGAAGGATGAGATTCTGCATGAGACAAGGAAAGTACTTAACAAGGGTCCATACATGGTCTCTGATCTTGGCAACGAGGGAGCATTGCTGATGGAATTTGAGACTCCGGAAGAAGCTGCAGTTGTAATGGCACATCTCAGACAACATCGAAGGGAAAAGAATATTCACTGGACACCTCCAAATGCAGGACAAATGAATATTGCACCTCCTTATTTAGATGGTGGAAGATCTGCTTGTGCCCCTGGTGGTGGTAACATGAGAAGCAACAATCCTGGGAACATGCCCAGTAGTATGGTTGGGTCACCTCATGCTCCAATGGTACCAGAGAGTCCTAACTTCAGGACAAGAATGTCAGAGCTATCTTCCTTGCTTTATACACTGCGTGCAAAATACAACATCAATCAAAATTCAAGTTATTTTGAAAACTACATATCTGGAAGTTGCAATACATCAATGAGGGAAGAAGACAGAACTCCTACTAGCACTCTCTGGGTTTCTTTTCCAAATTTTAATTCTCCTTTTGTCACTGATGAGGAATTGATGAGAATATGTAATCTTGCCATCAGCAATACTGGGTCTGTTGTGAGGATGACTCGAGCAAGTGTACAGGTGGGCTGTGGTTGGTTTGTTGAGTGCAGTAGTGTAGATGCTGCTATCACTGTCTTGAAGAATCTCCGTAGTTGTCCTGGAATTTTCCTTCGAATAGAATTCAGTTCACCCGGAAGGTTCCATGCAACACCTTTTCTGAGGAACCATGAAAGTTGTGCTATGGAGCTTCCATCTCCCAGAATATTACACGAGAATCATGCAATACCTCAGCAAGGTGGATATTCCTATCAGTCAAGCTGGGCTCCTTCTGGTCATACAGAGATGCTTGAAATAGGGGTTGGAAAGACTGATGCTTGTGAAAAAAACGTGCTGATAGATCATCCACAAGGTGGTCACATGGTGTCTGGAACCATTCCATGCTTGCCCATATCAACAATGGGACCTCCCGCTCCACCACCTCCACCTCAGATGCAGCCACCTCCATTTGTTCGATCTCCATACCCTCCTCCAAACAGTTCTTGGGATGCAAGGGGTTTAAACCACCCTTTGCCTTTAAATCCAATATCACCAAATGTTATACCTAATTCTTATCCAGGTAATTCTGTTGCATGCCCTCCCTTTTTACCCGCTTCCGTGACACCTCTTTCTCAGATACAAGGAACTCCGATGCAGCATCTAGACCATGTTTTCCCCCATTCTGTTGCTCCACCTTCAATATCATCTCTACCACCTTCCCAGCCAGAGATGCCTCCTCCTATACCTCCATCCCCACCACCTTTGCCTCACTCACAACCACCTAACATTCCTCCTCCACCCAGTTCCCCTCCGCCTCCACCTCCACCCTTATCTGCCACAGGAGCCAGTGAAGTAGAAAATTGCAGCCAGCATGTTCAGTGTCAATGGAAAGGAGCACTTTGTAAAAGCGGGGTTCAATATTGTTCAATTTATGCACAGAGAGTGGATTCCCAAACTTGCAAATACTTAAATGCTGGTCCAGAACCTATTGAGTGGCCTGCAAAATTAGATATGACCAAGCGCACAGATTTTAAGCATGTGAAGTCGACTTTCACCAGCACGTCACCAAGTAAAAGGGAGATATGTCAGCTGACCCCATCTTCTGTTGGAGACCATAAAGGATTTCAAGATTTTGTATCGTACTTGAAGCAGAGGGATTGTGCAGGAGTAATAAAGATACCGGTCACTAAATCACTATGGACAAGGCTTCTCTTTATACTTCCATATTCACAGGACTCGTGTTCTCTGCTCTCAATTCCTCCAGGTCCACCAGATAGCCTAATTGCCTTGGTTCTTCCCAAAGAAACAAACTTCGAATGGGTTTGA 3927 43.57 MASAEQPLKKRRNYGPAAPEPSPPLPQLPQPPPPQIPATDQTSIAPSPPTPPQLSQAEILLRRRNRDEIRSVYECFKRIRFFLSQKEKGAPTPDIEQAYLSLITASRGCTSVKRIVADFIPRYAPHCPTALEAATKVIINMHNQSLGIISNGEDVDNVAFETARACIIGLVDICAAVMSKASTSSVIRGICFEVFQNVFTFFVSSFEGKDIFQIVDKEALRLQDSADVFTELKQKYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFEFFNMAAEGIHKDGQYFLNQIVLGLDVDITHHLDKRSENQTSPKYCKDDAKEQVSVSSHFSGDASSVSRNCMLSLVMGKDQSFRNWMVTQYKRLRDLPSFRALADIASSLEGIFESFSELMNNEDTQVNIDEEMSDSLKHSTRNRGEISIELSDKRRKLRHCDSLEDGFNNKVTGQHFSSIPIDCKHTTCSDFDTGSLRSMAFDVQEPGGLLHGSLPQSLDPLSKHDHLSYAKTSLDLQHNSFECTKHSIDGNQVSGVDHNFPAQRLSSGDINNDLVPPRHQLSVPCSSTTCQSSWFSDGDSSAMDIFSASKQLWVGLLGPEVSEGHIRYQFERFGYIGHFFFFPLKRFAVVEYGHIIDAIRAREYMRGQFQWCVKFMDIGLGTRGSTHGVAIGSSSHVYVGNVLSYWVKDEILHETRKVLNKGPYMVSDLGNEGALLMEFETPEEAAVVMAHLRQHRREKNIHWTPPNAGQMNIAPPYLDGGRSACAPGGGNMRSNNPGNMPSSMVGSPHAPMVPESPNFRTRMSELSSLLYTLRAKYNINQNSSYFENYISGSCNTSMREEDRTPTSTLWVSFPNFNSPFVTDEELMRICNLAISNTGSVVRMTRASVQVGCGWFVECSSVDAAITVLKNLRSCPGIFLRIEFSSPGRFHATPFLRNHESCAMELPSPRILHENHAIPQQGGYSYQSSWAPSGHTEMLEIGVGKTDACEKNVLIDHPQGGHMVSGTIPCLPISTMGPPAPPPPPQMQPPPFVRSPYPPPNSSWDARGLNHPLPLNPISPNVIPNSYPGNSVACPPFLPASVTPLSQIQGTPMQHLDHVFPHSVAPPSISSLPPSQPEMPPPIPPSPPPLPHSQPPNIPPPPSSPPPPPPPLSATGASEVENCSQHVQCQWKGALCKSGVQYCSIYAQRVDSQTCKYLNAGPEPIEWPAKLDMTKRTDFKHVKSTFTSTSPSKREICQLTPSSVGDHKGFQDFVSYLKQRDCAGVIKIPVTKSLWTRLLFILPYSQDSCSLLSIPPGPPDSLIALVLPKETNFEWV* 1309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24699806 24709149 + CsaV3_4G034990.1 Csa04g02473 528083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02473 1308 Gene3D - 573 659 IPR012677 -
Csa04g02473 1308 MobiDBLite consensus disorder prediction 1090 1151 - -
Csa04g02473 1308 PANTHER NUCLEIC ACID BINDING PROTEIN 1 1307 - -
Csa04g02473 1308 MobiDBLite consensus disorder prediction 17 53 - -
Csa04g02473 1308 MobiDBLite consensus disorder prediction 1099 1146 - -
Csa04g02473 1308 MobiDBLite consensus disorder prediction 1007 1037 - -
Csa04g02473 1308 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1 1307 - -
Csa04g02473 1308 MobiDBLite consensus disorder prediction 1007 1030 - -
Csa04g02473 1308 MobiDBLite consensus disorder prediction 1 55 - -
Csa04g02473 1308 Pfam SPOC domain 1157 1284 IPR012921 -
Csa04g02473 1308 SUPERFAMILY RNA-binding domain, RBD 569 642 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02473 K18667 ASCC2; activating signal cointegrator complex subunit 2 - csv:101209442 2509.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g658 Blo01g01497 . Bda01g00588 . Bpe02g00450 . . . . . Cma01g01791 . Car01g01397 . . . . . . . . . . . . . . . . . . Cone4ag1610 Cone7ag1342 . . Lsi04g01491 Csa04g02473 . . . . . . . . . . Sed01g2712 Cmo01g01849 . . . . . . . Bhi09g03234 Tan01g4701 Cmetu07g2077 . Hepe01g1824 . . . . . . . . . . . Chy07g00185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02473 Csa_Chr04 FPKM 0.794665 1.211779 4.073745 3.826837 3.433577 3.604933 4.042508 30.751675 30.615906 32.242981