Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02476 ATGTGCTCGTTTGGATGCAATTGCATGGATTCTCAAAACACGAAATGTGTTTGGTTTTGGTTGCCAAACAGCTTATCTTTCGATGATATACTTCGATCGGTTTCTTTCAAGGAGAGCCATTACTGTAAGAATGAGAAGCTGTGGGCGATTAGGCTACTGGCAGTGGCTTGTCTTTCCTTGGCATCAAAAATGGAAGAATTGAAGGTTCCAGCATTATCAGAATTTCCGGTGGACGATTTCAACTTTGAAAGCAAGGTAATCCAAAGAATGGAGCTTTTGGTGTTGAACACATTGGAATGGAAGATGGGTTCAACAACTCCTTTCTCCTTCATTCCTTATTTCATATCTAAATTATCCATTGAATCCCCACCAAGCAATAAAGTTTCTCAGATTGTCGAACTCATCTGGGTCATGATTAGAGAAACAAGTACACAAAACCATCGGCCTTCTGTCGTAGCAGCAGCCACAGCCATTTTAGCAACAATGGATGACAGATTAACAAGGAAAGCCTTGCAATTGAAGATGAAGTCCATTTCGCAATGTAGATATCTTGAAGTAGAAGAAGTGATTTCTTGTTACAATCTGATGCAAGAGCTAAGATTGGAAAAATGTAGAGAAGAAGCAGATTGTTTGAAATCACCAGATTTATCACCAACCCAAATGAAATCCATGGATTGTTCAGAAAATTCATCAGTAACATCGTCGCTTGCCTCGAAAAGAAAACGGCTAAACTTTAGTAACTTAGATGAAAAATGTGGTGTGGCTGAAGCAAAACGGCCCCGGTAG 786 39.82 MCSFGCNCMDSQNTKCVWFWLPNSLSFDDILRSVSFKESHYCKNEKLWAIRLLAVACLSLASKMEELKVPALSEFPVDDFNFESKVIQRMELLVLNTLEWKMGSTTPFSFIPYFISKLSIESPPSNKVSQIVELIWVMIRETSTQNHRPSVVAAATAILATMDDRLTRKALQLKMKSISQCRYLEVEEVISCYNLMQELRLEKCREEADCLKSPDLSPTQMKSMDCSENSSVTSSLASKRKRLNFSNLDEKCGVAEAKRPR* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24730194 24733382 + CsaV3_4G035020.1 Csa04g02476 528086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02476 261 PANTHER CYCLIN-D5-1 43 224 - -
Csa04g02476 261 Gene3D - 98 232 - -
Csa04g02476 261 Gene3D - 24 97 - -
Csa04g02476 261 CDD CYCLIN 48 95 IPR013763 -
Csa04g02476 261 Pfam Cyclin, N-terminal domain 49 102 IPR006671 -
Csa04g02476 261 PANTHER CYCLINS 43 224 IPR039361 -
Csa04g02476 261 SUPERFAMILY Cyclin-like 88 201 IPR036915 -
Csa04g02476 261 SMART Cyclin_C_2 105 236 IPR004367 -
Csa04g02476 261 Pfam Cyclin, C-terminal domain 106 200 IPR004367 -
Csa04g02476 261 SUPERFAMILY Cyclin-like 44 102 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02476 K18811 CYCD5; cyclin D5, plant - csv:101209688 427.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02476 Csa-Chr4:24730194 Csa06g03126 Csa-Chr6:26701732 1.81E-28 dispersed
Csa04g02476 Csa-Chr4:24730194 Csa06g03020 Csa-Chr6:26017996 9.17E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g655 Blo01g01496 Blo12g00986 Bda01g00589 Bda03g00183 Bpe02g00451 . . Bma01g02248 . . Cma01g01787 Cma09g00289 Car01g01395 . . Cpe06g00199 . . . . . . . . . . . . . . . . Cone7ag1340 . . Lsi04g01489 Csa04g02476 . . . . . . . . . . . Cmo01g01845 Cmo09g00280 . . . Car09g00243 . Cpe02g00219 Bhi09g03230 . . . . . . Cla05g02105 Cam05g2257 Cec05g2278 Cco05g2318 Clacu05g2254 Cmu05g2116 Cre05g2240 . . Chy07g00188 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005430 2 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02476 Csa_Chr04 FPKM 14.08564 14.376775 11.705032 11.727713 10.633675 10.524566 12.210397 23.646576 22.86153 22.409687