Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02477 ATGGAAAGTTATTTGAATGAGAATTTTGGTGACGTGAAGCCGAAAAACTCGTCCGACGAAGCGCTTCAAAGATGGAGGCGGCTTTGCTGGCTGGTGAAGAATCGGAAACGGAGGTTTCGATTTACTGCCAATCTTTCTAAACGATTCGAGGCCAATGCTATTAGACGCTCCAATCAGGAGAAGTTCAGAGTTGCAGTTTTGGTTTCACAAGCTGCGCTTCAGTTTATCAATGGGTTGGATTTTTCTCCTGATTATGTTGTGCCTGAAGAGGTCAAACAGGCAGGTTTTGAAATTTGTGCAGATGAAGCAGGCTCCATTGTCGACGGCCGTGACGTGAAAAAGCTGAAGATTCATGGGGGCGCTGAGGGTATTGCAACTAAGCTCGCCACATCAACGGAGAAAGGCATTCCTACTACAGACCATTTGATGAAGAAAAGAAGAGACGTTTACGGAATTAACAAATTCACCGAAAGCCCACCTCGAGGATTTTGGCTTTTTGTTTGGGAAGCTCTCCAGGATACGACTCTAATGATACTCGCTTTCTGTGCTGTTGTTTCCCTTCTTGTTGGCATAGTGATGGAAGGGTGGCCGAAAGGTGCTCATGATGGGCTTGGCATTGTTGCGAGTATCTTGCTTGTTGTATTTGTCACTGCCACCAGTGACTATAGGCAATCACTTCAGTTCAAGGATTTGGACAGGGAAAAGAAGAAGATTGCGATTCAGGTTACCAGAAATGGATTGAGACAAAAGATTTCTATATACGAACTTCTTCCTGGTGATCTTGTTCATCTTGCCATGGGTGACCAGGTACCAGCAGATGGACTTTTCGTTTCGGGGTACTCTCTTCTAATAAATGAATCCAGTTTAACAGGTGAGAGCGAACCAGTCAACGTAAATTCTCAAAATCCTTTCCTGTTGTCTGGAACAAAGGTTCAGGATGGTTCGTGTAAGATGGTTGTGACTTCTGTTGGCATGAGAACCCAATGGGGAAAACTGATGGCTACTCTTAGTGAAGGAGGTGATGATGAGACTCCTCTACAGGTAAAGCTCAATGGGGTGGCAACAATTATCGGTAAAATAGGCCTGTTTTTTGCTGTTATAACTTTCGCTGTATTGGTTCAAGGGTTGTTCAGTCGCAAGCTTCAAGAAGGGTCTTACTTCAGCTGGTCCGGAGATGAAGCAAGGGAAGTTTTGGAATTCTTTGCTGTCGCCGTAACTATTGTTGTGGTTGCCGTGCCTGAAGGGCTGCCTTTGGCGGTGACACTAAGTCTTGCATTTGCAATGAAAAAGATGATGAACGATAAGGCACTTGTCAGGCACTTGGCTGCTTGTGAGACGATGGGATCAGCTACTACCATTTGTAGTGACAAAACTGGAACCTTGACAACTAACCACATGACTGTTGTGAAAGCCTGCATCTGCAGCAAGGTCAAGGAAGTTAGCAATTCTAGCAAGTGTTCCGATTATCGTACAGAGCTTCCCGTTTCCGCTGTTGGTATTTTGCTGCAATCGATATTTAACAACACTGGTGGAGAAATCGTCAAGAACAAAGATGGTAAAAATGAGACGCTTGGGACACCCACCGAGTCCGCTCTTCTGGAATTCGGCCTTTTGCTTGGTGGGGATTTCCAAGAAGAACGACAAAAGTCCAAAATCACCAGAGTCGAGCCATTCAATTCTGTGAAGAAACGAATGGGGGTTGTTTTGGAGCTCCCAGCCGGTGGCTTCCGCGCGCACAGCAAAGGTGCCTCAGAGATCGTTTTAGCTTCATGTGACAAAGTTCTTGATTCCGACGGTCAGGCAGTCCCTCTCAATGAAGAGTCCATCAACTTTTTGAAGGATACCATCGAAGAATTTGCGGGCGAAGCTCTTCGAACTTTGTGCCTGGCTTACCTGGACACTGAAGGCGACTATAACCCTGAAAGTCCGATTCCCGCTTGTGGCTACACGTGCATAGGAATCGTTGGTATCAAGGATCCCGTTCGTCCGGGAGTCAAGGAGTCCGTTGCAATTTGTAAGGCCGCCGGTATAACCGTACGGATGGTTACGGGAGATAACATCACTACCGCCAAAGCAATTGCTAGGGAATGTGGGATTTTAACTGACGATGGTATAGCAATTGAAGGTCCTGAATTCCGGGAGAAGAAGGAGGAAGAATTGAGTGTAATAGTACCGAAACTTCAGGTTATGGCTCGATCTTCACCAATGGATAAACATACTCTTGTAAAGCACTTACGAACCACTTTTCAAGAGGTCGTTGCAGTTACTGGTGATGGAACGAATGATGCTCCGGCACTTCATGAAGCAGATATTGGATTGGCTATGGGCATTGCTGGGACTGAGGTAGCAAAAGAGAGTGCTGATGTAATAATTCTTGACGACAACTTCTCTACAATTGCAACTGTTGCAAAATGGGGGCGTTCAGTCTACATAAATATCCAAAAGTTTGTCCAGTTTCAGCTAACGGTGAATGTGGTTGCACTTCTCGTCAATTTTTCTTCGGCCTGTTTGACAGGAAATGCTCCCCTCACTGCCGTGCAACTGCTTTGGGTCAACATGATAATGGACACACTCGGAGCTCTTGCATTGGCAACCGAGCCTCCTACTGATGACTTGATGAAGAGATTACCAGTTGGACGGAAAGGGAATTTCATTAGCAATGTGATGTGGAGAAATATCTTAGGGCAGTCAGTATATCAGTTTGTAATAGTTTGGTATCTCCAGACAAGGGGACAAGCTCTTTTTCATCTTGATGGCCCGGACTCTGGATTGATACTGAATACACTGATTTTCAATGCATTCGTCTTTTGTCAGGTTTTTAATGAGATAAGCTCAAGAGACATGGAAAAGATAAACGTGTTTAAAGGAATATTGAAGAACCACGTCTTTGTCGCCGTGCTTGCTTGCACCGTCCTTTTCCAGTTCATAATCATCCAATTCCTGGGAACATTTGCAAACACATATCCTCTAAACCACCAGCAATGGTTTGTCACTGTGTTATTTGGATTCCTTGGGATGCCAATTGCAGCAGCTTTGAAGATGATTCCGGTTGGATCAGAGTGA 3063 45.12 MESYLNENFGDVKPKNSSDEALQRWRRLCWLVKNRKRRFRFTANLSKRFEANAIRRSNQEKFRVAVLVSQAALQFINGLDFSPDYVVPEEVKQAGFEICADEAGSIVDGRDVKKLKIHGGAEGIATKLATSTEKGIPTTDHLMKKRRDVYGINKFTESPPRGFWLFVWEALQDTTLMILAFCAVVSLLVGIVMEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDREKKKIAIQVTRNGLRQKISIYELLPGDLVHLAMGDQVPADGLFVSGYSLLINESSLTGESEPVNVNSQNPFLLSGTKVQDGSCKMVVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLVQGLFSRKLQEGSYFSWSGDEAREVLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICSKVKEVSNSSKCSDYRTELPVSAVGILLQSIFNNTGGEIVKNKDGKNETLGTPTESALLEFGLLLGGDFQEERQKSKITRVEPFNSVKKRMGVVLELPAGGFRAHSKGASEIVLASCDKVLDSDGQAVPLNEESINFLKDTIEEFAGEALRTLCLAYLDTEGDYNPESPIPACGYTCIGIVGIKDPVRPGVKESVAICKAAGITVRMVTGDNITTAKAIARECGILTDDGIAIEGPEFREKKEEELSVIVPKLQVMARSSPMDKHTLVKHLRTTFQEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRLPVGRKGNFISNVMWRNILGQSVYQFVIVWYLQTRGQALFHLDGPDSGLILNTLIFNAFVFCQVFNEISSRDMEKINVFKGILKNHVFVAVLACTVLFQFIIIQFLGTFANTYPLNHQQWFVTVLFGFLGMPIAAALKMIPVGSE* 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24733875 24740980 - CsaV3_4G035030.1 Csa04g02477 528087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02477 1020 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Csa04g02477 1020 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 206 377 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g02477 1020 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 723 837 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g02477 1020 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 387 516 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g02477 1020 Gene3D - 142 337 - -
Csa04g02477 1020 SMART Cation_ATPase_N_a_2 120 191 IPR004014 -
Csa04g02477 1020 CDD P-type_ATPase_Ca_PMCA-like 145 889 - -
Csa04g02477 1020 SUPERFAMILY Calcium ATPase, transduction domain A 240 334 IPR008250 -
Csa04g02477 1020 Pfam Cation transport ATPase (P-type) 515 594 - -
Csa04g02477 1020 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g02477 1020 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g02477 1020 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa04g02477 1020 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 111 1017 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Csa04g02477 1020 Pfam Cation transporter/ATPase, N-terminus 119 186 IPR004014 -
Csa04g02477 1020 PANTHER CALCIUM-TRANSPORTING ATPASE 3 1017 - -
Csa04g02477 1020 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Csa04g02477 1020 Gene3D - 169 1015 - -
Csa04g02477 1020 Gene3D - 451 801 IPR023214 -
Csa04g02477 1020 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 665 IPR023299 GO:0000166
Csa04g02477 1020 Gene3D - 464 660 IPR023299 GO:0000166
Csa04g02477 1020 PANTHER CATION TRANSPORTING ATPASE 3 1017 - -
Csa04g02477 1020 SFLD p-type atpase 436 808 IPR044492 -
Csa04g02477 1020 SUPERFAMILY HAD-like 452 861 IPR036412 -
Csa04g02477 1020 Pfam haloacid dehalogenase-like hydrolase 740 800 - -
Csa04g02477 1020 Gene3D - 17 77 - -
Csa04g02477 1020 Pfam Cation transporting ATPase, C-terminus 841 1015 IPR006068 -
Csa04g02477 1020 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Csa04g02477 1020 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Csa04g02477 1020 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Csa04g02477 1020 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Csa04g02477 1020 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Csa04g02477 1020 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
Csa04g02477 1020 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1016 IPR023298 -
Csa04g02477 1020 Pfam E1-E2 ATPase 239 432 - -
Csa04g02477 1020 SFLD C1.7: P-type atpase like 436 808 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02477 Csa-Chr4:24733875 Csa07g02289 Csa-Chr7:21300958 0 dispersed
Csa02g00356 Csa-Chr2:2467648 Csa04g02477 Csa-Chr4:24733875 7.08E-17 transposed
Csa05g01391 Csa-Chr5:14841551 Csa04g02477 Csa-Chr4:24733875 0 transposed
Csa04g02477 Csa-Chr4:24733875 Csa06g03028 Csa-Chr6:26063517 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02477 K01537 - csv:101221694 1983.38