Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02488 ATGATTGAATTTTATCGGAATTCTTCAATTGAATGGAAGCCCTCTCCTGTAGTTGCGCTAGCCTCCAGTGCCGATGATTCTCAGGTGGCGGCTGCCCGAGAAGACGGCTCGCTTGAGATTTGGCTGGTCTCTCCTGGTTCTGTTGGGTGGCACTGTCAGTTGACCATTAGTGGAGACCCCACTTCTAGGGTTTCATCACTTGTTTGGTGTTCTGCCCGTTCAAAAGATAGGCCTTCTGGTCGTTTATTTTCATCCAGCATTGATGGTTCAATTTCGGAGTGGGATTTGTTTGATTTAACGCAGAAGTCCGCGTTAGAATCAATTGGTGTTTCCATCTGGCAAATTGCTGCAGCATCCTCTAGTAGCCCTGAGGTTCACAGGGAGGAGGTAAAGACACAAGACACTGAAAACGGGCATGTAACTGACGACGAAACTGATTGCCAAGATTGTAGTGAGAGTGAAGATGATTCTGATTCATCTGAGCTTCATGTCCAATCTAGCGATACCTCTCTAGCAATTGCTTGTGATGATGGTTGTGTGCGTATTTACAATATAGGTGACGCAGAAGAGTTTATTTACAAAAGATCGTTGTCTAGGGTCAGTGGCAGGGTTTTAAGTGTAACATGGAGTAATGATGCAGAACGTATATTTTCAGGGAGCAGTGATGGGTTTATTCGATGCTGGAATGCTAGTCTCGGGCATGAGATCTATAGGATTACTGCAGGACTTGGAGGTTTAGGCAGTGGACCAGAACTTTGTGTATGGTCATTGCTTTTCCTCAGGTGTGGTACCCTCGTCAGTGCAGATAGTACTGGTAGTGTCCAGTTTTGGGACAGTAATCATGGAACTCTTTTGCAAGCACACACCCTACACAAGGGTGATGTGAACGCACTTGCAGTGACCCCTAATCACAATAGAGTGTATTCTGCTGGCTCTGATGGTCAGGTTATCCTCTATAAGCTCTCTAACGAGAATGTTGGGTCTAGTGAAGATAAGGGTTCTTCTGAAATGATGAAGAAATGGATTTATGTTGGTCATGTGAGGGCTCATACTCACGATATCAGGGCTTTGACTGTTGCAGTACCAATTTGTCGAGAAGAGCCGTTGCAAGATGATGTGGTAAAAAGAATCCGTCATAGGAAGAAACCTAATGATTTTAGCTACCGTAAGTGGGCCCATCTGGGAGTTCCAATGCTAATGTCTGGCGGTGATGATACAAAACTGTTTGCATACTCTGCTCAGGAATTTACCAAATTTTCTCCCCATGATATTTGTCCTGCACCTCAAAGGGCACCTATGCAACTTGTACTTAATACAGTTTTCAACCAAGCACCGTTATTACTTGTTCAGGGTGCCCACTCTCTGGACATCCTGTGTATTCGCCCAAAAAGTGGTTCCTTTGGAGATAAGGCCTGTGGCCCTTCTAAGGGACATACAAAGGCAGATTTATTGGTTCGAGTTAAGAGCAAGGCCTCTCGAAAGATTATCTGCAGTACCATTTCTAACTCCGGGAAGCTATTTGCATATTCTGATCATACCAAACCCAACTTATTTGAACTGAAGAAATCTGGTGGAAGCAAAGGTTCTTGGACTGTTAGTAGGAGAAAACTTCCAAATGTACTACCATTTGCCCATTCTATGGTTTTCAGTTTTGATTCTTCTCGCCTAATCATAGCAGGACATGATAAAAGGATATACGTTGTTGATGTGGGTAGTTTGGAAGTCTTACATAGTTTTACGCCTTTCCGGGAGCTGCAGGATGACACATTGCCACCCACAGAACCTCCTATAACAAAAATATTTACAAGTTCAGATGGGCAGTGGTTAGCTGCAGTCAATTGCTTTGGAGATATATACGTATTCAATATGGAGATTATGAGGCAACACTGGTTCATTTCAAGACTAGATGGTGCCTCAATTACAGCTGGAGGCTTTCCCCAATGGAACAACAATGTGCTTGTCGTCACTACTTCTTCAAATCAGGTTTATGCCTTTGATGTTGAGGCCAAACAATTAGGAGACTGGTCAATGCGACATACACAGGCTCTCCCTAAGAGATTTCAAGAATTTCCAGGGGAGGTTATTGGTCTCTCTTTCCCACCATCTGCCACTTCGTTGCCTGTTATTGTGTATAGTTCCAGGGCAATGTGCTTGATTGACTTCAAGATGTCAGTGGATCAAGATGATGAATATGTCATGATAAGTGGACAAGATTCAACGGTGAAGAGTTTATGGGGTACTCCAATAAATGGGAAATTGAAACGTAAGTTAAGAGACTGCCAAATAGAGGGTAGACCACACGGTAGAAAGAATTTTGAAATTTTTCCTTTTAGAGATCCTGTTTTACTTATTGGACACCTCTCCAAAACCTCACTATTGATTATAGAAAAACCATGGTTAGAAGTGGCCAACACTTTCGATACCGCACCTGTGCACAGACATATATATGGGACTTAA 2457 43.18 MIEFYRNSSIEWKPSPVVALASSADDSQVAAAREDGSLEIWLVSPGSVGWHCQLTISGDPTSRVSSLVWCSARSKDRPSGRLFSSSIDGSISEWDLFDLTQKSALESIGVSIWQIAAASSSSPEVHREEVKTQDTENGHVTDDETDCQDCSESEDDSDSSELHVQSSDTSLAIACDDGCVRIYNIGDAEEFIYKRSLSRVSGRVLSVTWSNDAERIFSGSSDGFIRCWNASLGHEIYRITAGLGGLGSGPELCVWSLLFLRCGTLVSADSTGSVQFWDSNHGTLLQAHTLHKGDVNALAVTPNHNRVYSAGSDGQVILYKLSNENVGSSEDKGSSEMMKKWIYVGHVRAHTHDIRALTVAVPICREEPLQDDVVKRIRHRKKPNDFSYRKWAHLGVPMLMSGGDDTKLFAYSAQEFTKFSPHDICPAPQRAPMQLVLNTVFNQAPLLLVQGAHSLDILCIRPKSGSFGDKACGPSKGHTKADLLVRVKSKASRKIICSTISNSGKLFAYSDHTKPNLFELKKSGGSKGSWTVSRRKLPNVLPFAHSMVFSFDSSRLIIAGHDKRIYVVDVGSLEVLHSFTPFRELQDDTLPPTEPPITKIFTSSDGQWLAAVNCFGDIYVFNMEIMRQHWFISRLDGASITAGGFPQWNNNVLVVTTSSNQVYAFDVEAKQLGDWSMRHTQALPKRFQEFPGEVIGLSFPPSATSLPVIVYSSRAMCLIDFKMSVDQDDEYVMISGQDSTVKSLWGTPINGKLKRKLRDCQIEGRPHGRKNFEIFPFRDPVLLIGHLSKTSLLIIEKPWLEVANTFDTAPVHRHIYGT* 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24777676 24784667 - CsaV3_4G035140.1 Csa04g02488 528098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02488 818 MobiDBLite consensus disorder prediction 124 146 - -
Csa04g02488 818 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 197 229 - -
Csa04g02488 818 SMART WD40_4 145 184 IPR001680 GO:0005515
Csa04g02488 818 SMART WD40_4 534 569 IPR001680 GO:0005515
Csa04g02488 818 SMART WD40_4 3 42 IPR001680 GO:0005515
Csa04g02488 818 SMART WD40_4 240 278 IPR001680 GO:0005515
Csa04g02488 818 SMART WD40_4 190 229 IPR001680 GO:0005515
Csa04g02488 818 SMART WD40_4 578 622 IPR001680 GO:0005515
Csa04g02488 818 SMART WD40_4 49 95 IPR001680 GO:0005515
Csa04g02488 818 SMART WD40_4 281 320 IPR001680 GO:0005515
Csa04g02488 818 Gene3D - 148 431 IPR015943 GO:0005515
Csa04g02488 818 Gene3D - 6 142 IPR015943 GO:0005515
Csa04g02488 818 SUPERFAMILY WD40 repeat-like 263 703 IPR036322 GO:0005515
Csa04g02488 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 238 IPR001680 GO:0005515
Csa04g02488 818 MobiDBLite consensus disorder prediction 123 162 - -
Csa04g02488 818 Pfam WD domain, G-beta repeat 204 229 IPR001680 GO:0005515
Csa04g02488 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 329 IPR001680 GO:0005515
Csa04g02488 818 Gene3D - 475 711 IPR015943 GO:0005515
Csa04g02488 818 SUPERFAMILY WD40 repeat-like 13 325 IPR036322 GO:0005515
Csa04g02488 818 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 1 818 IPR044622 GO:0010073|GO:0035266
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02488 K14548 UTP4, CIRH1A; U3 small nucleolar RNA-associated protein 4 - csv:101222880 1592.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02488 Csa-Chr4:24777676 Csa01g00412 Csa-Chr1:2579628 2.03E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g629 Blo01g01492 Blo12g00991 Bda01g00594 Bda03g00168 Bpe02g00456 Bpe04g00153 Bma04g00142 Bma01g02244 . . Cma01g01778 Cma09g00298 Car01g01386 . . Cpe06g00208 . . . . . . . . . . . . . . . Cone4ag1622 Cone7ag1326 . . Lsi04g01475 Csa04g02488 . . . . . . . . . . Sed01g2728 Cmo01g01836 Cmo09g00290 . . . Car09g00251 . Cpe02g00228 Bhi09g03217 Tan01g4681 Cmetu07g0687 . Hepe01g1838 Mch11g0372 . Cla05g02114 Cam05g2266 Cec05g2287 Cco05g2329 Clacu05g2263 Cmu05g2126 Cre05g2249 . . Chy07g00197 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005030 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02488 Csa_Chr04 FPKM 5.611681 6.39238 1.496546 1.869506 0.0 0.0 0.0 0.0 0.473883 0.0