Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02489 ATGTCCAATCGAAGATCTCTCAACAGCATTTCTGTTAACCGTAAATGTCGTCAATATGATGCCATACTTGCTTACCGTTGGGCCAACCATGACCAAGTTCAAAAGGCACTTCACATACATGAGGGAAGCATTGAAGAATGGATTAGATGTCGTAAAAATGAATATTACAATTATGAGTTGACCAGTGTTTTTTCTTATCACGTGAACCTTAGCTCTAAAGGTTATCGATCGTTAATCTATAGTGGAGATCATGATATGCAAGTGTCACATATGGAAACTCGTGCATGGATCAAAGCTTTAAATTATTCCATAGTAGATGATTGGAGGCCTTGGTTCATGGAGGATGAAGTCGGCGGGTACACAAGAAGTTTTGCAAATAATATGGCATTTGTAACCGTAAAAGGTGGAGGACATACACCAGAATATGCACGAGAAGAATCCAGCATAGTTTTTAAGAGATGGATAATAAGAGAATCCTTGTAA 483 38.3 MSNRRSLNSISVNRKCRQYDAILAYRWANHDQVQKALHIHEGSIEEWIRCRKNEYYNYELTSVFSYHVNLSSKGYRSLIYSGDHDMQVSHMETRAWIKALNYSIVDDWRPWFMEDEVGGYTRSFANNMAFVTVKGGGHTPEYAREESSIVFKRWIIRESL* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24787778 24788791 - CsaV3_4G035150.1 Csa04g02489 528099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02489 160 PANTHER 1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE 12 157 - -
Csa04g02489 160 Gene3D alpha/beta hydrolase 1 160 IPR029058 -
Csa04g02489 160 Pfam Serine carboxypeptidase 12 155 IPR001563 GO:0004185|GO:0006508
Csa04g02489 160 SUPERFAMILY alpha/beta-Hydrolases 18 158 IPR029058 -
Csa04g02489 160 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 12 157 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02489 Csa-Chr4:24787778 Csa04g02492 Csa-Chr4:24802701 5.93E-95 dispersed
Csa04g02489 Csa-Chr4:24787778 Csa04g02491 Csa-Chr4:24796951 1.21E-96 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02489 K16296 - csv:101207623 285.034