Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02494 ATGCCGATGTACCAGCCTTCCGGTCGGAGAAGAGAGGCCGATACGGAGCTGGGTTTAGGTGGTGGTGGGCAAGTTCTTGATGTAGAAACCGCCGTGAAAGATGGTATTCTCGGTGGCGGCGGTGGAGGCGGTGGGTTAATTAGTGAGGGCGGAATGACTGAGAAATTGGATCTGAAGGAGATAGTGGAGGAGCTTGAGAACATTGAGGTTCCTTCGGTGTTTATTTGCCCAATCTCATTAGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTATGAACGATCTAATATCTTGAAATGGTTCTCACTTGGCCATATCACATGTCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAACACTCTTCACCAACTCATTTACAGTTGGTTTTCCCAGAAGTATTTGGCTATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGGGCTCTTGAGCTCTTAGATACATTGAAGAAGGTCAAGGGCCAAGCTAGAGTCCGAGCTTTGAAGGATCTTCGCCAAGTTGTAGCTTTGAATTCGGCGAAGAACACTGTGGAAGAAAATGGTGGTGTTGCTTTGATTTCATCTTTGTTGGGTCCTTTCACATCCCACGCTGTTGGCTCTGAAGCCCTTGGGATTTTGGTGAACTTGGATCTTGATGCCGAGTCAAGGAGAAACCTTGTTCAACCTGCTAAGATTTCATTAATGGTGGACATGTTAAACGAGGGATCCACAGATACCAAAATCAACTGCACCAGATTGATTGAAACGTTGCTCAATGGGGATGTTTGTGGAGCGGACACTGTCTCAAGTTTAAGTCTCTTGGTTGGATTGTTGAGATTAATCAAAGAAAAGAAACACCAAAATGGTGTTCTCGCTGGATTAAGATTGCTAAAAGCTCTGTGCTCCCAAGAACCAGTGAGGAACTCATTAGTGAGCATTGGAGCAATCCCTCAGTTGATCGAAATTCTCCCGAATTTCGACCCTGAATGTTTGGAAATTGCCCTTCACATATTGGACTCACTCTCATCTCTCTCAGAGGGGAGGGTGGCGTTGAAAGATTGCCCCAACACCATTCCAAACTTAGTCAAATTATTAATGAGAATCTCAGAGAGCTGCACTCAGCTGGCCCTATCAATTCTATGGGCAGTCTGTAAACTTGCCCCTGAAGAATGTGCATCCCAAGCTGTGGAAGCAGGCTTAGCAGCCAAGCTTCTTCTGGTGATTCAGAGTGGTTGCAACCCTGTTCTTAAACAACGCTCTGCCGAGCTTCTAAAGCTCTGCAGCTTAAATTACACAGCAACCCATTTCATATCCAAGTGTAAGCTTACAAGAACAATACAATAA 1362 45.74 MPMYQPSGRRREADTELGLGGGGQVLDVETAVKDGILGGGGGGGGLISEGGMTEKLDLKEIVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHITCPTTMQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKDLRQVVALNSAKNTVEENGGVALISSLLGPFTSHAVGSEALGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTDTKINCTRLIETLLNGDVCGADTVSSLSLLVGLLRLIKEKKHQNGVLAGLRLLKALCSQEPVRNSLVSIGAIPQLIEILPNFDPECLEIALHILDSLSSLSEGRVALKDCPNTIPNLVKLLMRISESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATHFISKCKLTRTIQ* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24811770 24815204 + CsaV3_4G035200.1 Csa04g02494 528104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02494 453 Gene3D - 144 452 IPR011989 -
Csa04g02494 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 143 IPR013083 -
Csa04g02494 453 SUPERFAMILY ARM repeat 239 436 IPR016024 -
Csa04g02494 453 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842|GO:0016567
Csa04g02494 453 SUPERFAMILY RING/U-box 64 140 - -
Csa04g02494 453 MobiDBLite consensus disorder prediction 1 21 - -
Csa04g02494 453 SUPERFAMILY ARM repeat 167 272 IPR016024 -
Csa04g02494 453 Pfam U-box domain 70 140 IPR003613 GO:0004842|GO:0016567
Csa04g02494 453 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 42 452 - -
Csa04g02494 453 SMART Ubox_2 73 136 IPR003613 GO:0004842|GO:0016567
Csa04g02494 453 CDD RING-Ubox_PUB 74 116 IPR045210 -
Csa04g02494 453 PANTHER WDSAM1 PROTEIN 42 452 IPR045185 GO:0061630
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01879 Csa04g02494 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02494 Csa-Chr4:24811770 Csa03g01844 Csa-Chr3:14148559 9.95E-42 dispersed
Csa02g01879 Csa-Chr2:17861302 Csa04g02494 Csa-Chr4:24811770 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02494 - - csv:101223113 853.203