Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02494 ATGCCGATGTACCAGCCTTCCGGTCGGAGAAGAGAGGCCGATACGGAGCTGGGTTTAGGTGGTGGTGGGCAAGTTCTTGATGTAGAAACCGCCGTGAAAGATGGTATTCTCGGTGGCGGCGGTGGAGGCGGTGGGTTAATTAGTGAGGGCGGAATGACTGAGAAATTGGATCTGAAGGAGATAGTGGAGGAGCTTGAGAACATTGAGGTTCCTTCGGTGTTTATTTGCCCAATCTCATTAGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTATGAACGATCTAATATCTTGAAATGGTTCTCACTTGGCCATATCACATGTCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAACACTCTTCACCAACTCATTTACAGTTGGTTTTCCCAGAAGTATTTGGCTATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGGGCTCTTGAGCTCTTAGATACATTGAAGAAGGTCAAGGGCCAAGCTAGAGTCCGAGCTTTGAAGGATCTTCGCCAAGTTGTAGCTTTGAATTCGGCGAAGAACACTGTGGAAGAAAATGGTGGTGTTGCTTTGATTTCATCTTTGTTGGGTCCTTTCACATCCCACGCTGTTGGCTCTGAAGCCCTTGGGATTTTGGTGAACTTGGATCTTGATGCCGAGTCAAGGAGAAACCTTGTTCAACCTGCTAAGATTTCATTAATGGTGGACATGTTAAACGAGGGATCCACAGATACCAAAATCAACTGCACCAGATTGATTGAAACGTTGCTCAATGGGGATGTTTGTGGAGCGGACACTGTCTCAAGTTTAAGTCTCTTGGTTGGATTGTTGAGATTAATCAAAGAAAAGAAACACCAAAATGGTGTTCTCGCTGGATTAAGATTGCTAAAAGCTCTGTGCTCCCAAGAACCAGTGAGGAACTCATTAGTGAGCATTGGAGCAATCCCTCAGTTGATCGAAATTCTCCCGAATTTCGACCCTGAATGTTTGGAAATTGCCCTTCACATATTGGACTCACTCTCATCTCTCTCAGAGGGGAGGGTGGCGTTGAAAGATTGCCCCAACACCATTCCAAACTTAGTCAAATTATTAATGAGAATCTCAGAGAGCTGCACTCAGCTGGCCCTATCAATTCTATGGGCAGTCTGTAAACTTGCCCCTGAAGAATGTGCATCCCAAGCTGTGGAAGCAGGCTTAGCAGCCAAGCTTCTTCTGGTGATTCAGAGTGGTTGCAACCCTGTTCTTAAACAACGCTCTGCCGAGCTTCTAAAGCTCTGCAGCTTAAATTACACAGCAACCCATTTCATATCCAAGTGTAAGCTTACAAGAACAATACAATAA 1362 45.74 MPMYQPSGRRREADTELGLGGGGQVLDVETAVKDGILGGGGGGGGLISEGGMTEKLDLKEIVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHITCPTTMQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKDLRQVVALNSAKNTVEENGGVALISSLLGPFTSHAVGSEALGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSTDTKINCTRLIETLLNGDVCGADTVSSLSLLVGLLRLIKEKKHQNGVLAGLRLLKALCSQEPVRNSLVSIGAIPQLIEILPNFDPECLEIALHILDSLSSLSEGRVALKDCPNTIPNLVKLLMRISESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATHFISKCKLTRTIQ* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24811770 24815204 + CsaV3_4G035200.1 Csa04g02494 528104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02494 453 Gene3D - 144 452 IPR011989 -
Csa04g02494 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 143 IPR013083 -
Csa04g02494 453 SUPERFAMILY ARM repeat 239 436 IPR016024 -
Csa04g02494 453 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842|GO:0016567
Csa04g02494 453 SUPERFAMILY RING/U-box 64 140 - -
Csa04g02494 453 MobiDBLite consensus disorder prediction 1 21 - -
Csa04g02494 453 SUPERFAMILY ARM repeat 167 272 IPR016024 -
Csa04g02494 453 Pfam U-box domain 70 140 IPR003613 GO:0004842|GO:0016567
Csa04g02494 453 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 42 452 - -
Csa04g02494 453 SMART Ubox_2 73 136 IPR003613 GO:0004842|GO:0016567
Csa04g02494 453 CDD RING-Ubox_PUB 74 116 IPR045210 -
Csa04g02494 453 PANTHER WDSAM1 PROTEIN 42 452 IPR045185 GO:0061630
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02494 - - - csv:101223113 853.203
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01879 Csa04g02494 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02494 Csa-Chr4:24811770 Csa03g01844 Csa-Chr3:14148559 9.95E-42 dispersed
Csa02g01879 Csa-Chr2:17861302 Csa04g02494 Csa-Chr4:24811770 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g622 . . . . . . . . Cmo05g00134 Cmo12g00545 Cma01g01775 Cma09g00301 Car01g01385 Car12g00549 Sed11g0913 Cpe06g00211 Cpe07g00525 Bhi04g00447 Tan02g1715 Cmetu03g2084 . Hepe08g1345 . Lcy13g2147 Cla08g01635 Cam08g2137 Cec08g1725 Cco08g1844 Clacu08g1825 . Cre08g1608 . . . . Lsi04g01467 Csa04g02494 . Cme03g02117 . . . . . . . . Sed01g2733 Cmo01g01834 Cmo09g00300 Cma12g00605 Cma05g00129 Car05g00111 Car09g00253 Cpe11g00111 Cpe02g00230 Bhi09g03207 Tan01g4675 Cmetu07g0012 . Hepe01g1842 Mch11g0376 . . . . . . . . Lsi08g01540 Csa02g01879 Chy07g00203 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g03801 . 1 1044 U-box Gene Family AT5G15400 75.9 0.0e+00 1568.9
Csa02g01443 . 196 842 U-box Gene Family AT2G23140 66.2 9.2e-122 434.5
Csa02g01820 . 1 776 U-box Gene Family AT1G24330 59.3 1.8e-244 842.4
Csa05g02223 . 1 758 U-box Gene Family AT1G24330 58.2 1.6e-229 792.7
Csa02g01820 . 1 775 U-box Gene Family AT1G67530 59.1 1.2e-240 829.7
Csa05g02223 . 1 758 U-box Gene Family AT1G67530 57.0 1.7e-223 772.7
Csa06g03568 . 1 362 U-box Gene Family AT4G21350 62.1 2.3e-120 429.1
Csa03g02707 . 135 462 U-box Gene Family AT3G07360 54.4 1.1e-78 290.4
Csa05g01046 . 269 456 U-box Gene Family AT1G71020 71.4 9.2e-74 274.6
Csa05g02038 . 246 457 U-box Gene Family AT1G71020 54.5 8.1e-54 208.4
Csa01g02400 CCT 259 428 U-box Gene Family AT1G71020 57.8 3.9e-48 189.5
Csa05g02787 . 246 413 U-box Gene Family AT1G71020 58.5 5.1e-48 189.1
Csa06g01498 CCT 254 423 U-box Gene Family AT1G71020 55.4 1.4e-45 181.0
Csa05g01046 . 16 660 U-box Gene Family AT1G23030 56.7 1.0e-109 394.4
Csa01g02400 CCT 94 632 U-box Gene Family AT2G28830 53.4 9.6e-102 367.9
Csa06g01498 CCT 93 633 U-box Gene Family AT2G28830 50.9 1.2e-99 360.9
Csa01g02400 CCT 1 642 U-box Gene Family AT3G46510 72.4 3.2e-178 622.1
Csa06g01498 CCT 11 647 U-box Gene Family AT3G46510 65.8 4.8e-158 555.1
Csa05g02787 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Csa05g02787 . 9 619 U-box Gene Family AT3G54850 69.6 1.7e-168 589.7
Csa01g02400 CCT 9 631 U-box Gene Family AT3G54850 59.5 1.4e-122 437.2
Csa06g01498 CCT 13 626 U-box Gene Family AT3G54850 57.5 1.3e-115 414.1
Csa06g01017 . 169 721 U-box Gene Family AT5G42340 66.0 4.6e-124 442.2
Csa04g01681 . 9 671 U-box Gene Family AT5G01830 57.7 5.0e-195 677.9
Csa01g02298 . 1 714 U-box Gene Family AT1G29340 67.2 2.0e-245 845.5
Csa03g02112 . 27 443 U-box Gene Family AT5G37490 52.0 3.5e-112 402.1
Csa04g01150 . 4 423 U-box Gene Family AT3G52450 50.6 1.4e-113 406.8
Csa03g03495 . 1 404 U-box Gene Family AT2G35930 55.4 6.6e-121 431.0
Csa06g02471 . 12 412 U-box Gene Family AT2G35930 52.0 4.9e-116 414.8
Csa03g01844 . 9 424 U-box Gene Family AT3G19380 64.2 2.1e-146 515.8
Csa03g01844 . 1 424 U-box Gene Family AT1G49780 64.3 6.2e-151 530.8
Csa06g02795 . 1 403 U-box Gene Family AT5G64660 55.7 5.1e-121 431.4
Csa06g02795 . 1 403 U-box Gene Family AT5G09800 50.9 5.0e-105 378.3
Csa04g02494 CCT 1 454 U-box Gene Family AT3G49810 63.5 6.8e-156 547.4
Csa02g01879 CCT 24 479 U-box Gene Family AT3G49810 62.3 1.0e-151 533.5
Csa02g01879 CCT 24 479 U-box Gene Family AT5G65920 62.5 2.5e-150 528.9
Csa04g02494 CCT 1 454 U-box Gene Family AT5G65920 62.4 1.2e-149 526.6
Csa03g00887 CCT 1 874 U-box Gene Family AT2G45910 51.1 1.1e-228 790.0
Csa02g00037 . 11 733 U-box Gene Family AT2G19410 50.7 4.6e-208 721.5
Csa05g00483 . 24 807 U-box Gene Family AT4G25160 52.6 4.4e-225 778.1
Csa05g02927 . 39 555 U-box Gene Family AT5G40140 55.6 5.9e-93 338.6
Csa01g00180 . 27 537 U-box Gene Family AT5G40140 51.9 6.0e-69 258.8
Csa01g00824 . 29 498 U-box Gene Family AT5G40140 50.6 1.9e-54 210.7
Csa06g01954 . 4 815 U-box Gene Family AT1G76390 60.4 1.9e-265 912.1
Csa06g01954 . 13 815 U-box Gene Family AT1G20780 61.0 5.0e-274 940.6
Csa02g01820 . 1 779 U-box Gene Family AT1G27910 62.4 2.7e-269 924.9
Csa05g02223 . 1 768 U-box Gene Family AT1G27910 63.3 1.5e-264 909.1
Csa06g03023 . 1 593 U-box Gene Family AT5G67530 74.6 4.0e-260 894.0
Csa03g03444 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Csa05g00483 . 25 807 U-box Gene Family AT5G61550 50.7 7.7e-225 777.3
Csa03g01174 . 4 489 U-box Gene Family AT1G04510 73.9 9.3e-205 709.9
Csa03g01174 . 4 458 U-box Gene Family AT2G33340 72.6 6.4e-192 667.2
Csa03g02706 . 14 280 U-box Gene Family AT3G07370 66.7 3.9e-101 364.8
Csa03g03801 . 1 1044 U-box Gene Family AT5G15400 75.9 0.0e+00 1568.9
Csa02g01443 . 196 842 U-box Gene Family AT2G23140 66.2 9.2e-122 434.5
Csa02g01820 . 1 776 U-box Gene Family AT1G24330 59.3 1.8e-244 842.4
Csa05g02223 . 1 758 U-box Gene Family AT1G24330 58.2 1.6e-229 792.7
Csa02g01820 . 1 775 U-box Gene Family AT1G67530 59.1 1.2e-240 829.7
Csa05g02223 . 1 758 U-box Gene Family AT1G67530 57.0 1.7e-223 772.7
Csa06g03568 . 1 362 U-box Gene Family AT4G21350 62.1 2.3e-120 429.1
Csa03g02707 . 135 462 U-box Gene Family AT3G07360 54.4 1.1e-78 290.4
Csa05g01046 . 269 456 U-box Gene Family AT1G71020 71.4 9.2e-74 274.6
Csa05g02038 . 246 457 U-box Gene Family AT1G71020 54.5 8.1e-54 208.4
Csa01g02400 CCT 259 428 U-box Gene Family AT1G71020 57.8 3.9e-48 189.5
Csa05g02787 . 246 413 U-box Gene Family AT1G71020 58.5 5.1e-48 189.1
Csa06g01498 CCT 254 423 U-box Gene Family AT1G71020 55.4 1.4e-45 181.0
Csa05g01046 . 16 660 U-box Gene Family AT1G23030 56.7 1.0e-109 394.4
Csa01g02400 CCT 94 632 U-box Gene Family AT2G28830 53.4 9.6e-102 367.9
Csa06g01498 CCT 93 633 U-box Gene Family AT2G28830 50.9 1.2e-99 360.9
Csa01g02400 CCT 1 642 U-box Gene Family AT3G46510 72.4 3.2e-178 622.1
Csa06g01498 CCT 11 647 U-box Gene Family AT3G46510 65.8 4.8e-158 555.1
Csa05g02787 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Csa05g02787 . 9 619 U-box Gene Family AT3G54850 69.6 1.7e-168 589.7
Csa01g02400 CCT 9 631 U-box Gene Family AT3G54850 59.5 1.4e-122 437.2
Csa06g01498 CCT 13 626 U-box Gene Family AT3G54850 57.5 1.3e-115 414.1
Csa06g01017 . 169 721 U-box Gene Family AT5G42340 66.0 4.6e-124 442.2
Csa04g01681 . 9 671 U-box Gene Family AT5G01830 57.7 5.0e-195 677.9
Csa01g02298 . 1 714 U-box Gene Family AT1G29340 67.2 2.0e-245 845.5
Csa03g02112 . 27 443 U-box Gene Family AT5G37490 52.0 3.5e-112 402.1
Csa04g01150 . 4 423 U-box Gene Family AT3G52450 50.6 1.4e-113 406.8
Csa03g03495 . 1 404 U-box Gene Family AT2G35930 55.4 6.6e-121 431.0
Csa06g02471 . 12 412 U-box Gene Family AT2G35930 52.0 4.9e-116 414.8
Csa03g01844 . 9 424 U-box Gene Family AT3G19380 64.2 2.1e-146 515.8
Csa03g01844 . 1 424 U-box Gene Family AT1G49780 64.3 6.2e-151 530.8
Csa06g02795 . 1 403 U-box Gene Family AT5G64660 55.7 5.1e-121 431.4
Csa06g02795 . 1 403 U-box Gene Family AT5G09800 50.9 5.0e-105 378.3
Csa04g02494 CCT 1 454 U-box Gene Family AT3G49810 63.5 6.8e-156 547.4
Csa02g01879 CCT 24 479 U-box Gene Family AT3G49810 62.3 1.0e-151 533.5
Csa02g01879 CCT 24 479 U-box Gene Family AT5G65920 62.5 2.5e-150 528.9
Csa04g02494 CCT 1 454 U-box Gene Family AT5G65920 62.4 1.2e-149 526.6
Csa03g00887 CCT 1 874 U-box Gene Family AT2G45910 51.1 1.1e-228 790.0
Csa02g00037 . 11 733 U-box Gene Family AT2G19410 50.7 4.6e-208 721.5
Csa05g00483 . 24 807 U-box Gene Family AT4G25160 52.6 4.4e-225 778.1
Csa05g02927 . 39 555 U-box Gene Family AT5G40140 55.6 5.9e-93 338.6
Csa01g00180 . 27 537 U-box Gene Family AT5G40140 51.9 6.0e-69 258.8
Csa01g00824 . 29 498 U-box Gene Family AT5G40140 50.6 1.9e-54 210.7
Csa06g01954 . 4 815 U-box Gene Family AT1G76390 60.4 1.9e-265 912.1
Csa06g01954 . 13 815 U-box Gene Family AT1G20780 61.0 5.0e-274 940.6
Csa02g01820 . 1 779 U-box Gene Family AT1G27910 62.4 2.7e-269 924.9
Csa05g02223 . 1 768 U-box Gene Family AT1G27910 63.3 1.5e-264 909.1
Csa06g03023 . 1 593 U-box Gene Family AT5G67530 74.6 4.0e-260 894.0
Csa03g03444 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Csa05g00483 . 25 807 U-box Gene Family AT5G61550 50.7 7.7e-225 777.3
Csa03g01174 . 4 489 U-box Gene Family AT1G04510 73.9 9.3e-205 709.9
Csa03g01174 . 4 458 U-box Gene Family AT2G33340 72.6 6.4e-192 667.2
Csa03g02706 . 14 280 U-box Gene Family AT3G07370 66.7 3.9e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001278 2 3 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02494 Csa_Chr04 FPKM 13.298701 14.759749 7.293746 6.252822 6.735002 7.370396 7.130723 5.433451 5.239838 4.435946