Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02497 ATGGAGCCAAGAGTTAGAACTTCTTCACCAAGCCATGGCTCTCCATCATGTGGGAAGCTTGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTCACAGCTTTCTTTGGATCGTTGGAACGATGCTCTTGTATTCGTATTGCAACGGCTGAGGACGATGGCGATGAGGGGAACGACATCCCCTTGATTCCGAACGACGGAAATCTTCGACAGGAGGGCACTGCAGAAGGAGAAATCGTTGAGTTTCATAGGCCGGAACCTGGGTTCACGTCGGCCGAAATCCAAGAGCTTTGGTCTCTACTCGAAGATCCAGCCAGGTCCAACTCTGGTTCACAAGACTCGTTTCAAGCCATATCTTTGATCGACGAAGAGAGAAGAAGAAAGCGAATGATATCAAACCGAGAGTCAGCTAGACGGTCGAGGTTGAGGAAGAAGAGACATTTGGAGAATCTAGCAATCCAAACGGACAGGTTGAAGATGAAGAATCAGGAGCTGAAAAGGCAGCTGAATTTAGTGGTGAACCGTTGTTATATGGTAAGAAGACAAAATGAAGGACTGTGGTCGGAATTTGTAGCACTTCATGCACGGCTATCGGACCTTTACCGGATTTCTGTTCCCATGCAGGAGAAGGAGAATTCATGCATGCAAATATCATTCAATCATTTCTCTTAA 672 46.88 MEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDDGDEGNDIPLIPNDGNLRQEGTAEGEIVEFHRPEPGFTSAEIQELWSLLEDPARSNSGSQDSFQAISLIDEERRRKRMISNRESARRSRLRKKRHLENLAIQTDRLKMKNQELKRQLNLVVNRCYMVRRQNEGLWSEFVALHARLSDLYRISVPMQEKENSCMQISFNHFS* 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24826494 24832222 + CsaV3_4G035230.1 Csa04g02497 528107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02497 223 CDD bZIP_plant_GBF1 126 176 IPR045314 GO:0003700|GO:0006355
Csa04g02497 223 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 123 186 IPR004827 GO:0003700|GO:0006355
Csa04g02497 223 SMART brlzneu 121 185 IPR004827 GO:0003700|GO:0006355
Csa04g02497 223 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 128 143 IPR004827 GO:0003700|GO:0006355
Csa04g02497 223 Gene3D - 123 176 - -
Csa04g02497 223 PANTHER BASIC LEUCINE ZIPPER 4 107 215 - -
Csa04g02497 223 SUPERFAMILY Leucine zipper domain 125 176 IPR046347 GO:0003700|GO:0006355
Csa04g02497 223 PANTHER BZIP TRANSCRIPTION FACTOR 44 107 215 - -
Csa04g02497 223 Coils Coil 148 175 - -
Csa04g02497 223 Pfam bZIP transcription factor 124 183 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02497 - - - csv:101211417 295.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02497 Csa-Chr4:24826494 Csa06g03281 Csa-Chr6:27548815 3.40E-14 dispersed
Csa05g00027 Csa-Chr5:121858 Csa04g02497 Csa-Chr4:24826494 7.84E-11 transposed
Csa05g00203 Csa-Chr5:1229042 Csa04g02497 Csa-Chr4:24826494 1.17E-07 transposed
Csa02g01875 Csa-Chr2:17840760 Csa04g02497 Csa-Chr4:24826494 2.13E-30 wgd
Csa04g02497 Csa-Chr4:24826494 Csa06g03044 Csa-Chr6:26167947 1.40E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g618 . Blo12g00994 . . . Bpe04g00147 . . . . . Cma09g00304 Car01g01382 . . . . . . . . . . . . . . . . . . . . . . Lsi04g01464 Csa04g02497 . . . . . . . . . . Sed01g3816 Cmo01g01831 Cmo09g00304 . . . Car09g00256 . . Bhi09g03203 Tan01g4672 Cmetu09g0436 . . . . . . . . . . . . . Chy07g00206 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003122 0 1 0 1 1 2 3 2 2 1 1 2 3 2 1 2 2 2 3 2 2 2 2 2 1 2 2 2 2 0 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31628 PF00170 bZIP_1 1.90E-09 CL0018 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02497 Csa_Chr04 FPKM 4.053212 4.616852 4.158476 3.727488 4.639235 5.146314 5.088693 6.995296 7.034775 6.726117