Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02500 ATGGAAAATCTGTCTCAGTCCTCAGGTGGACAGTTTCGACCAGTTATCCCAGCTCAACCAGGCCAGGCATTCATTTCATCATCTGCCCAACAGTTTCAGTTAGCAGGGCAGAATATATCTTCATCAAATGTTGGAGTGCCAGCTGGTCAAGTCCAGCCACATCAATATCCTCAATCAATGCCGCAGTTAGTGCAAAGACCTGGCCATCCCAGCTATGTCACTCCTTCGTCCCAGCCCATTCAAATGCCTTATGTTCAGACAAGGCCGCTTACTTCTGTTCCGCCTCAGTCCCAGCAAAATGTGGCTGCACCAAATAATCATATGCATGGTTTGGGTGCTCATGGACTACCTCTTTCTTCACCATATACCTTCCAGCCAATGTCACAAATGCATGCGCCTGTTAGTGTTGGTAATAGCCAACCTTGGCTGTCTTCTGCAAGCCAGACTACAAACCTTGTCTCACCAATCGATCAAGCTAACCAGCATTCTTCTGTTTCTGCTGTAAACCCAGCTGCCAATGCTCCTGTGTTCAATCAGCAGTTGTCATCTGATTGGCAAGAGCATGCATCAGCTGATGGAAGAAGATATTATTACAATAAAAAAACCAAACAGTCTAGTTGGGAGAAGCCATTGGAACTTATGACACCACTTGAGAGGGCCGATGCATCAACCGTGTGGAAGGAATTTACTGCTCCAGATGGAAGAAAGTACTATTACAATAAGGTGACGAAGGAATCAAAGTGGACCATGCCAGAAGAATTGAAGTTGGCTCGTGAGCAGGCTCAGAAAGAAGCCACCCAAGGAACACAAACAGATATATCTGTTATGGCACCTCAACCTACACTTGCTGCTGGTCTCTCCCACGCTGAAACACCAGCAATTTCTTCTGTTAACTCTAGCATTTCTCCAACGGTATCTGGGGTTGCAACAAGTCCAGTTCCTGTCACTCCTTTTGTTTCTGTATCCAATTCTCCTTCAGTGATGGTTACTGGATCATCAGCCATTACTGGCACACCCATTGCTTCAACAACTAGTGTGTCTGGAACAGTTTCTTCTCAATCTGTTGCTGCTTCTGGAGGTACTGGTCCTCCTGCTGTGGTCCATGCCAATGCTTCGTCAGTAACTCCTTTTGAAAGTCTTGCATCTCAAGATGTCAAAAATACTGTCGATGGGACTTCCACAGAAGACATTGAGGAAGCAAGGAAGGGAATGGCAGTTGCAGGAAAAGTTAATGAAACCGTTCTAGAGGAAAAATCTGCTGATGATGAACCATTAGTATTTGCCAACAAGCAGGAGGCAAAGAATGCATTTAAAGCACTTTTGGAATCGGTAAATGTTCAGTCTGATTGGACGTGGGAGCAGGCCATGCGAGAAATAATTAATGACAAAAGATATGGCGCCTTGAAAACTCTTGGTGAGCGGAAGCAAGCATTTCATGAGTATTTGGGACATAGAAAAAAATTGGATGCTGAAGAAAGACGCATAAGACAGAAAAAAGCTCGTGAGGAGTTCACCAAGATGTTGGAAGAGTCCAAGGAACTCACATCGTCTACCAGATGGAGCAAAGCTGTTAGTATGTTTGAGAATGATGAGCGGTTTAAAGCTGTTGAACGTTCTAGAGACCGGGAGGATCTTTTCGAAAGCTACATAGTGGAACTCGAGAGGAAGGAAAAAGAAAGGGCTGCAGAGGAGCACAAGAAAAATATTGCTGAATATAGGAAATTCCTTGAGTCATGTGATTACATAAAGGTTAGCAGCCAGTGGCGAAAAGTACAAGATCGGTTGGAAGATGATGAAAGATGCTCACGTCTTGAGAAACTTGATCGCTTGCTTATTTTCCAGGACTATATACGTGACTTGGAAAAAGAGGAAGAGGATCAGAAGAAGATACAAAAGGAACGTGTTCGACGAATTGAAAGAAAAAACCGTGACGAGTTCCGCAAACTCATGGAAGAACACATTGCTGCTGGTGTTTTTACTGCTAAAACTTTCTGGCGTGATTACTGTTTGAAGGTTAAGGAATTGCCTCAGTATCAAGCTGTTGCTTCAAATACATCTGGCTCAACACCAAAGGACTTATTTGAGGATGTTCTAGAGGATTTGGAGAATAAGTATCATGAAGAAAAAACTCAGATAAAAGATGTGGTGAAGGCAGCGAAGATAACTATCACTTCATCATGGACATTTGATGACTTTAAAGCTGCCATTGAAGAGAGTGGTTCTCTTGCAGTTTCAGATATAAATTTTAAGCTTGTATATGAGGACTTACTAGAACGAGCCAAAGAAAAGGAGGAGAAAGAAGCTAAAAGGCGTCAACGTCTAGCTGATGACTTCTCAGGACTGCTCCAGTCACTCAAGGAGATTACAACTTCTTCCAACTGGGAGGATAGCAAACAGCTTTTTGAAGAGAGTGAAGAGTATAGATCAATCGGGGAAGAGAGCTTTGCGAAGGAAGTTTTTGAGGAACACATCACACATTTACAAGAAAAGGCAAAAGAAAAGGAACGCAAGCGTGAGGAGGAGAAGGCTAAAAAGGAAAAAGAACGAGAGGAAAAAGAGAAGCGGAAGGAAAAAGAGCGTAAGGAGAAGGACAGAGAACGTGAAAAAGAAAAGGGGCGGGTCAAGAAGGATGAAACAGATAGTGAAAATGTAGATGTGAGCGATACTCATGTCTACAGAGAAGACAAGAAAAGGGACAAAGACAAAGATAGGAAACATCGGAAGCGACATCATAGTGCCACTGATGATGGTGCTTCTGATAAAGATGAGAGAGAGGAGTCTAAGAAGTCCCGCAAACATGGCAGTGACCGAAAAAAATCAAGGAAGCATGCATATTCACCTGAATCAGACAGTGAGAATAGGCACAGAAGGCACAAGAGAGATCATCGAGACGGCTCCCGTAGAAATCATGATGAACTTGAAGATGGGGAGCTTGGCGAGGATGGTGAAATTCAATAG 2958 43.44 MENLSQSSGGQFRPVIPAQPGQAFISSSAQQFQLAGQNISSSNVGVPAGQVQPHQYPQSMPQLVQRPGHPSYVTPSSQPIQMPYVQTRPLTSVPPQSQQNVAAPNNHMHGLGAHGLPLSSPYTFQPMSQMHAPVSVGNSQPWLSSASQTTNLVSPIDQANQHSSVSAVNPAANAPVFNQQLSSDWQEHASADGRRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTAPDGRKYYYNKVTKESKWTMPEELKLAREQAQKEATQGTQTDISVMAPQPTLAAGLSHAETPAISSVNSSISPTVSGVATSPVPVTPFVSVSNSPSVMVTGSSAITGTPIASTTSVSGTVSSQSVAASGGTGPPAVVHANASSVTPFESLASQDVKNTVDGTSTEDIEEARKGMAVAGKVNETVLEEKSADDEPLVFANKQEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYGALKTLGERKQAFHEYLGHRKKLDAEERRIRQKKAREEFTKMLEESKELTSSTRWSKAVSMFENDERFKAVERSRDREDLFESYIVELERKEKERAAEEHKKNIAEYRKFLESCDYIKVSSQWRKVQDRLEDDERCSRLEKLDRLLIFQDYIRDLEKEEEDQKKIQKERVRRIERKNRDEFRKLMEEHIAAGVFTAKTFWRDYCLKVKELPQYQAVASNTSGSTPKDLFEDVLEDLENKYHEEKTQIKDVVKAAKITITSSWTFDDFKAAIEESGSLAVSDINFKLVYEDLLERAKEKEEKEAKRRQRLADDFSGLLQSLKEITTSSNWEDSKQLFEESEEYRSIGEESFAKEVFEEHITHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDREREKEKGRVKKDETDSENVDVSDTHVYREDKKRDKDKDRKHRKRHHSATDDGASDKDEREESKKSRKHGSDRKKSRKHAYSPESDSENRHRRHKRDHRDGSRRNHDELEDGELGEDGEIQ* 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24840899 24850635 - CsaV3_4G035260.1 Csa04g02500 528110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02500 985 Coils Coil 613 641 - -
Csa04g02500 985 ProSiteProfiles FF domain profile. 430 484 IPR002713 -
Csa04g02500 985 Coils Coil 546 575 - -
Csa04g02500 985 MobiDBLite consensus disorder prediction 941 957 - -
Csa04g02500 985 CDD WW 183 212 IPR001202 GO:0005515
Csa04g02500 985 Pfam WW domain 182 210 IPR001202 GO:0005515
Csa04g02500 985 Pfam WW domain 226 251 IPR001202 GO:0005515
Csa04g02500 985 SUPERFAMILY FF domain 489 559 IPR036517 -
Csa04g02500 985 SUPERFAMILY FF domain 764 833 IPR036517 -
Csa04g02500 985 Coils Coil 691 718 - -
Csa04g02500 985 MobiDBLite consensus disorder prediction 828 901 - -
Csa04g02500 985 Gene3D FF domain 429 485 IPR036517 -
Csa04g02500 985 Gene3D - 222 267 - -
Csa04g02500 985 Gene3D - 164 221 - -
Csa04g02500 985 MobiDBLite consensus disorder prediction 828 985 - -
Csa04g02500 985 ProSiteProfiles WW/rsp5/WWP domain profile. 220 253 IPR001202 GO:0005515
Csa04g02500 985 SUPERFAMILY WW domain 184 218 IPR036020 GO:0005515
Csa04g02500 985 SUPERFAMILY WW domain 225 258 IPR036020 GO:0005515
Csa04g02500 985 Gene3D FF domain 765 839 IPR036517 -
Csa04g02500 985 SUPERFAMILY FF domain 557 626 IPR036517 -
Csa04g02500 985 ProSiteProfiles FF domain profile. 761 826 IPR002713 -
Csa04g02500 985 ProSiteProfiles FF domain profile. 637 700 IPR002713 -
Csa04g02500 985 SMART FF_2 565 619 IPR002713 -
Csa04g02500 985 SMART FF_2 771 826 IPR002713 -
Csa04g02500 985 SMART FF_2 639 700 IPR002713 -
Csa04g02500 985 SMART FF_2 430 484 IPR002713 -
Csa04g02500 985 SMART FF_2 497 552 IPR002713 -
Csa04g02500 985 SMART ww_5 221 253 IPR001202 GO:0005515
Csa04g02500 985 SMART ww_5 180 212 IPR001202 GO:0005515
Csa04g02500 985 Coils Coil 817 873 - -
Csa04g02500 985 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 9 979 IPR039726 GO:0045292
Csa04g02500 985 ProSiteProfiles WW/rsp5/WWP domain profile. 179 212 IPR001202 GO:0005515
Csa04g02500 985 SUPERFAMILY FF domain 422 483 IPR036517 -
Csa04g02500 985 MobiDBLite consensus disorder prediction 910 932 - -
Csa04g02500 985 ProSiteProfiles FF domain profile. 497 552 IPR002713 -
Csa04g02500 985 Pfam FF domain 567 616 IPR002713 -
Csa04g02500 985 Pfam FF domain 499 549 IPR002713 -
Csa04g02500 985 Pfam FF domain 641 696 IPR002713 -
Csa04g02500 985 Pfam FF domain 432 481 IPR002713 -
Csa04g02500 985 Pfam FF domain 776 823 IPR002713 -
Csa04g02500 985 CDD WW 226 253 IPR001202 GO:0005515
Csa04g02500 985 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 9 979 - -
Csa04g02500 985 ProSiteProfiles FF domain profile. 565 619 IPR002713 -
Csa04g02500 985 Coils Coil 753 777 - -
Csa04g02500 985 ProSitePatterns WW/rsp5/WWP domain signature. 185 210 IPR001202 GO:0005515
Csa04g02500 985 Gene3D FF domain 486 559 IPR036517 -
Csa04g02500 985 Gene3D FF domain 560 628 IPR036517 -
Csa04g02500 985 Gene3D FF domain 629 712 IPR036517 -
Csa04g02500 985 SUPERFAMILY FF domain 632 707 IPR036517 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02500 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - csv:101203479 1686.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02500 Csa-Chr4:24840899 Csa07g02276 Csa-Chr7:21205059 7.43E-06 dispersed
Csa04g00009 Csa-Chr4:72206 Csa04g02500 Csa-Chr4:24840899 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02500 Csa_Chr04 FPKM 10.949679 11.049651 11.705376 11.979082 22.410172 20.57749 20.933037 14.355636 12.587372 16.018761