Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02504 ATGGCCATGGAAGCTAGTTCTGAGCCTCAGCAACATTCTCACTACCATCACCGAGGCCAGGTAACTTCAGCAGTAGCTGTCTCTAACACCATGTCAAATAGCTTCTTAGCTTCTCACCACTACAATGGAGATTTTCTCTCTGTAGTGCCTCTCAAGTCTGATGGGTCTCTTTGTATCATGGATTCAATCAACACATCACAACCTCAAGATATATTGCCAAATATCTCACCAAAACTAGAGGATTTTCTTGGTGGTGCAACTCATGGAAAAGAAACCACAGCGCTAAGCTTAGACAGCATATATTACGATCAAAACGCGGAGCGATATTATTCTGCAATGTATCAATATCCTGCTGAGAATCCCGACAACGAGTCTCATATTGCAAGCTATTGTTCTGAAATAAGACAAGATATGGAGCAGCGGATCAATGGGTGTTGCTTTGGGGGAATGAATTGCCAAGACTTGAAGCCACTTAGCTTGTCCATGAGTCCTGGTTCTCAATCTAGTTGTGTCACTACTCCAAGTCAAATTTCTCAACCTGGACCATCCACCATGGAAATAAAGAAAAGGGCTCTGGCAAGTCAGAAGCAGCCGGTCCATCGGAAGTCGATCGACACATTCGGACAAAGAACTTCACAGTACAGAGGTGTTACTAGGCATAGATGGACCGGTAGATATGAGGCTCATTTGTGGGATAATAGTTGTAAGAAGGAAGGTCAAACCAGGAAAGGAAGACAAGTTTATCTCGGTGGCTATGATATGGAGGAGAAAGCCGCAAGAGCCTATGATCTTGCAGCTCTCAAGTACTGGGGTTCCTCTACACATTTAAACTTCCCGTTAAAGAACTATGAACTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATATGTGGCACACCTGAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCTATATACAGAGGTGTAACTAGACATCATCAGCATGGGAGATGGCAAGCTCGGATCGGGAGAGTCGCTGGAAATAAAGACCTGTATCTTGGCACATTTGGCACACAAGAGGAAGCTGCAGAAGCTTATGATATAGCAGCTATCAAGTTCCGTGGTGCAAATGCAGTTACAAACTTCGACACATCGAGGTACGATGTAGAAAGGATCATAGCAAGCAGTAGCCTTCTTTCGGGAGAGTTCGCGAGGAGAAAAAAAGAACACAAACCAACCAACACCATTGAACGTAAAGAACCAAAACAGAACGTCACACAAACTGACGAGGGGTTGGAAATGTCCACCAACTTAGATTGGAGGGCGGTATTCCACGACAACCTGCTACTGAATCCAAGCGCAAGTGTCGAATCCATAGACCAAAAGTCCATGACCTCAAGCAGATACGTGAATCATGTAATCGGAGTGGTCGAAACCGAAAGCTCTAATCAAGAAACTGTGAATGATTCAAGAAAGTACAAAACTCACTTCTCCAATGCTTCCTCTGTGGTTAGCAGCCTGAGCAGCTCAAGGGAAACAAGTCCTGATAAGTCAAATGGCTCATCCTCAGTATTATTTGCAAAATCCCCATTTGGAAGCAATGGAAGTAATTGGCTTCCATCACCCCAAATGAGGCTTGCTCCTATATCTTTGCCTGTTTGGAATGATGCATAA 1644 44.1 MAMEASSEPQQHSHYHHRGQVTSAVAVSNTMSNSFLASHHYNGDFLSVVPLKSDGSLCIMDSINTSQPQDILPNISPKLEDFLGGATHGKETTALSLDSIYYDQNAERYYSAMYQYPAENPDNESHIASYCSEIRQDMEQRINGCCFGGMNCQDLKPLSLSMSPGSQSSCVTTPSQISQPGPSTMEIKKRALASQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGSSTHLNFPLKNYELEIEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGANAVTNFDTSRYDVERIIASSSLLSGEFARRKKEHKPTNTIERKEPKQNVTQTDEGLEMSTNLDWRAVFHDNLLLNPSASVESIDQKSMTSSRYVNHVIGVVETESSNQETVNDSRKYKTHFSNASSVVSSLSSSRETSPDKSNGSSSVLFAKSPFGSNGSNWLPSPQMRLAPISLPVWNDA* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24869562 24873113 + CsaV3_4G035300.1 Csa04g02504 528114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02504 547 MobiDBLite consensus disorder prediction 394 420 - -
Csa04g02504 547 ProSiteProfiles AP2/ERF domain profile. 315 373 IPR001471 GO:0003700|GO:0006355
Csa04g02504 547 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 144 515 - -
Csa04g02504 547 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 3 117 - -
Csa04g02504 547 SUPERFAMILY DNA-binding domain 212 280 IPR016177 GO:0003677
Csa04g02504 547 MobiDBLite consensus disorder prediction 494 513 - -
Csa04g02504 547 Gene3D AP2/ERF domain 315 375 IPR036955 GO:0003700|GO:0006355
Csa04g02504 547 Gene3D AP2/ERF domain 212 281 IPR036955 GO:0003700|GO:0006355
Csa04g02504 547 PRINTS Ethylene responsive element binding protein signature 214 225 IPR001471 GO:0003700|GO:0006355
Csa04g02504 547 PRINTS Ethylene responsive element binding protein signature 355 375 IPR001471 GO:0003700|GO:0006355
Csa04g02504 547 Coils Coil 280 300 - -
Csa04g02504 547 CDD AP2 314 375 IPR001471 GO:0003700|GO:0006355
Csa04g02504 547 MobiDBLite consensus disorder prediction 394 416 - -
Csa04g02504 547 SUPERFAMILY DNA-binding domain 314 374 IPR016177 GO:0003677
Csa04g02504 547 CDD AP2 212 279 IPR001471 GO:0003700|GO:0006355
Csa04g02504 547 Pfam AP2 domain 315 365 IPR001471 GO:0003700|GO:0006355
Csa04g02504 547 Pfam AP2 domain 213 271 IPR001471 GO:0003700|GO:0006355
Csa04g02504 547 ProSiteProfiles AP2/ERF domain profile. 213 279 IPR001471 GO:0003700|GO:0006355
Csa04g02504 547 SMART rav1_2 213 285 IPR001471 GO:0003700|GO:0006355
Csa04g02504 547 SMART rav1_2 315 379 IPR001471 GO:0003700|GO:0006355
Csa04g02504 547 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 117 - -
Csa04g02504 547 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 144 515 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02504 Csa-Chr4:24869562 Csa07g02084 Csa-Chr7:20100472 6.49E-77 dispersed
Csa03g02829 Csa-Chr3:27057687 Csa04g02504 Csa-Chr4:24869562 1.18E-139 transposed
Csa03g03860 Csa-Chr3:33996660 Csa04g02504 Csa-Chr4:24869562 1.83E-08 transposed
Csa04g01404 Csa-Chr4:14070320 Csa04g02504 Csa-Chr4:24869562 2.32E-120 transposed
Csa06g02245 Csa-Chr6:20178210 Csa04g02504 Csa-Chr4:24869562 7.33E-07 transposed
Csa02g01870 Csa-Chr2:17788116 Csa04g02504 Csa-Chr4:24869562 2.82E-179 wgd
Csa04g02504 Csa-Chr4:24869562 Csa06g03048 Csa-Chr6:26200005 8.90E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31629 PF00847 AP2 2.10E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02504 K09285 - csv:101212143 1075.46