Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02505 ATGGGTGATCTCGAAAATGATGAAATGGGTTTTAGGAATTCGAATGATGGGTTAATGAATTGTCCATCTACAATGGCGATGGGTTCTTTTTTTGGGTCTGGTTGGGATCCACTGGTTTCATTAGGTCAAAGTGAGAATTATGGAGCAGCTTCTTCAATGGTGTCCTCTCATGGCGAATTTTCTAATTCATTTCCTGTTGTTTTGGAGAATCATGGAGGGAGTGGGACAACACAACAAGGTGTTCAATATCCGACAGATTTGGAGATGGGTTCGAAGTTGCCATGTTTTGGGAGTGGGAATTTTTCAGAAATGTTTGGTTCTTTTGGTGTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGGAGGAACCACAAACACTACCCAAACATCGCAAGAAAATTTACCTTTAGCTGGTGAAGAAATTTTACCATTATCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGGCCTTGATTCAACTTTCCCATTTAGCTCAAATAAGAAATCTGATATGAAATTGAAGAAGGATGTTTCTGGGGATAGTTCCAGTACTCAAGAAGAGAAAAATGCAGAAATGGAGCAAAATTTAGGTGGGAATTCACGTGGAAAATCAACTGGAAAACAAACTAAAGAGAAATCTAGTAATAGTGCTGAAGCTCCTAAGGAAAATTATATTCATGTGAGAGCTAGAAGAGGGCAAGCCACAAATAGTCATAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATAAGTGAAAGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGTAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAAATTATCAACTATGTTCAATCACTGCAGCAACAGGTTGAGTTTTTGTCAATGAAACTAGCTACTGTCAACCCGGACGTGAACGTTGATATTGAAAGGATTTTATCCAAAGATATTTTCAACATACGAGGCAGTAGTGGAAATGTTCTTGGATTTGATCCCGGGTTGAGTGCCGTTTCCCCTGTCCCTCCTCACCGGATGTTTCAGTTTCAAGGGACGATGTCGAGTATGCCAACCACATCCACACAGTTTCCTCCTATGCCTCAGACCATGTTAGAAAGCGATCTTCAAAGTCTTCTTCAAATGGGATTCGACTCAGGTTCAACAATTGACAATTTGGGACCAAATGGGCGGTTGAAACCAGAGCGTTAA 1209 40.61 MGDLENDEMGFRNSNDGLMNCPSTMAMGSFFGSGWDPLVSLGQSENYGAASSMVSSHGEFSNSFPVVLENHGGSGTTQQGVQYPTDLEMGSKLPCFGSGNFSEMFGSFGVAGQILGGCSSNYRNGGTTNTTQTSQENLPLAGEEILPLSVGSPNGKIRKRGLDSTFPFSSNKKSDMKLKKDVSGDSSSTQEEKNAEMEQNLGGNSRGKSTGKQTKEKSSNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNVDIERILSKDIFNIRGSSGNVLGFDPGLSAVSPVPPHRMFQFQGTMSSMPTTSTQFPPMPQTMLESDLQSLLQMGFDSGSTIDNLGPNGRLKPER* 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24884098 24888333 + CsaV3_4G035310.1 Csa04g02505 528115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02505 402 MobiDBLite consensus disorder prediction 173 187 - -
Csa04g02505 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 303 IPR036638 GO:0046983
Csa04g02505 402 MobiDBLite consensus disorder prediction 146 248 - -
Csa04g02505 402 MobiDBLite consensus disorder prediction 188 218 - -
Csa04g02505 402 CDD bHLH_AtBPE_like 228 313 - -
Csa04g02505 402 Gene3D - 235 308 IPR036638 GO:0046983
Csa04g02505 402 SMART finulus 244 294 IPR011598 GO:0046983
Csa04g02505 402 Pfam Helix-loop-helix DNA-binding domain 241 289 IPR011598 GO:0046983
Csa04g02505 402 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 23 401 IPR024097 GO:0006355
Csa04g02505 402 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 23 401 - -
Csa04g02505 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 238 288 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01869 Csa04g02505 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01870 Csa-Chr1:15708212 Csa04g02505 Csa-Chr4:24884098 1.77E-22 dispersed
Csa04g02505 Csa-Chr4:24884098 Csa07g00008 Csa-Chr7:185656 1.85E-45 dispersed
Csa01g02037 Csa-Chr1:17325781 Csa04g02505 Csa-Chr4:24884098 6.36E-44 transposed
Csa05g01353 Csa-Chr5:14293739 Csa04g02505 Csa-Chr4:24884098 7.23E-53 transposed
Csa05g02541 Csa-Chr5:26846039 Csa04g02505 Csa-Chr4:24884098 6.01E-55 transposed
Csa07g01563 Csa-Chr7:16047841 Csa04g02505 Csa-Chr4:24884098 3.08E-49 transposed
Csa02g01869 Csa-Chr2:17778099 Csa04g02505 Csa-Chr4:24884098 3.25E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31630 PF00010 HLH 4.20E-06 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02505 - - csv:101203971 785.408