Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02506 ATGGCGCCCTCGTTTGATTGGTGGGGAAAGGACACTCATAAAGGAACCCCTGTTGTTGTCAAGATGGAGAATCCAAATTGGTCGATGGTTGAACTGGAAGGTCCGTCGGAGGATGATTTTCTCATCGCTGGTGAGTCACCCACGAGTCGGGTCAGAGAGAAAGGGAGAGGGAAAAACGCCAAGCAACTCACGTGGGTTCTTCTCCTCAAGGCGCATAGAGCCGCCGGTTGTTTAACTTCCATTGGCTCTGCAATGGTGGACCTAGCCGCCGCCGTTAGACGCCGTGTTGCTTCTGGACGGACTGATGAGGAGGACGCCGACAATGACGTCACTGTCGGAGGTAGAGAGAAAGAGAACCCAACTGTTAAAACGAGATTCTATTCTTGTATTAAGGTGTTTCTATGGCTGTCGGTGCTTCTGTTGTGTTTTGAGATTGCGGCTTTCTTTAAGGGCTGGCATTTTGGTAGTCCAAAGCTTCAATTGGATTATCTCTGGGCATCGCCTTGGGGTTTTAAAGGAGCTTTTGGTTGGATTTACGCTCAGTGGGTATTGATTCGAGTAGAATATTTAGCTCCTCCTCTACAGTTCTTAGCCAATGCTTGTATCATATTGTTCATCATTCAAAGCTTGGATCGTTTAGTCTTGTGTTTGGGTTGTTTCTGGATCCGTTTCAAGAAAATCCAACCAGTTCTTAAACCTGAAGATGAAGATCTTGAATCCGGCGAGAAGGGATATTTCCCTATGGTTCTTGTTCAGATCCCTATGTGCAATGAAAAAGAGGTTTATCAGCAATCAATTGCTGCTATTTGCAACTTGGACTGGCCAAAAACCAAGCTACTGATTCAAGTTCTTGACGATTCCGATGACCCAACTACCCAGTTGTTGATTAAAGAGGAGGTCCACAAATGGCAGCAAGAGGGTGCCAACATTATTTATCGACATCGAGTCATTAGAGATGGTTATAAGGCTGGCAATCTCAAATCCGCCATGAATTGTAGCTATGTAAAAGACTACGAATTTGTTGCCATTTTCGATGCTGATTTTCAACCCACACCTGATTTCCTTAAAAGAACTGTTCCTCATTTCAAGGACAATGAAGAGTTGGGACTTGTTCAAGCAAGGTGGTCTTTTGTGAACAGGGATGAGAACTTGCTAACCAGGCTGCAGAACATCAATTTAGCTTTCCATTTTGAAGTAGAGCAGCAAGTGAACGGTGTCTTCCTCAACTTCTTTGGATTCAATGGCACTGCTGGTGTGTGGAGGATTAAAGCTCTCGAGGACGCTGGTGGGTGGTTGGAAAGGACCACCGTTGAGGACATGGATATTGCCGTTCGTGCTCATCTTCATGGATGGAAATTCATATTCCTAAACGATGTTGAGTGCCAGTGTGAGCTACCAGAATCTTATGAAGCTTATAGAAAACAACAACATAGATGGCATTCTGGTCCAATGCAATTGTTTCGCCTTTGTTTGCCTGCTGTTATTCGATCAAAGATTAGTATATGGAAGAAGTTCAACTTGATCTTCCTCTTCTTTTTGCTCAGAAAATTGATTCTGCCCTTCTATTCTTTCACACTTTTCTGCATTATTCTCCCAATGACAATGTTTGTTCCTGAGGCCGAGCTACCCGCTTGGGTCGTTTGCTATATCCCTGCCACCATGTCATTTCTAAACATCCTGCCTGCCCCAAAATCCTTCCCTTTCATTGTTCCTTACCTCCTTTTTGAGAACACCATGTCAGTCACCAAGTTCAATGCCATGATCTCAGGCCTGTTCCAGCTTGGTAGTGCCTATGAATGGGTTGTTACAAAGAAATCTGGCCGTTCCTCAGAGGGCGATCTTGTCTCCTTGGTAGAGAGAGAGCAAAAGCATCAGAGAGGGTCTTCGGCGCCCGACCTAGAAGAGCTGAAAGAAGAAATTCAGAAGCAAGAGAAGAAAGCTGCTTTACGAAAGAAGCACAACAGAATATACACAAAAGAGCTCGCATTGGCTTTCCTCCTCCTAACCGCATCAGCACGGAGCCTTCTGTCTGCACAAGGTATCCATTTCTACTTCTTGCTGTTCCAGGGGATCTCGTTCCTGCTGGTGGGTTTGGACTTGATCGGCGAGCAGATAGGTTGA 2121 45.26 MAPSFDWWGKDTHKGTPVVVKMENPNWSMVELEGPSEDDFLIAGESPTSRVREKGRGKNAKQLTWVLLLKAHRAAGCLTSIGSAMVDLAAAVRRRVASGRTDEEDADNDVTVGGREKENPTVKTRFYSCIKVFLWLSVLLLCFEIAAFFKGWHFGSPKLQLDYLWASPWGFKGAFGWIYAQWVLIRVEYLAPPLQFLANACIILFIIQSLDRLVLCLGCFWIRFKKIQPVLKPEDEDLESGEKGYFPMVLVQIPMCNEKEVYQQSIAAICNLDWPKTKLLIQVLDDSDDPTTQLLIKEEVHKWQQEGANIIYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFKDNEELGLVQARWSFVNRDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAVIRSKISIWKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEREQKHQRGSSAPDLEELKEEIQKQEKKAALRKKHNRIYTKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQIG* 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24889393 24893330 - CsaV3_4G035320.1 Csa04g02506 528116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02506 706 Coils Coil 633 653 - -
Csa04g02506 706 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 239 464 IPR029044 -
Csa04g02506 706 SUPERFAMILY Nucleotide-diphospho-sugar transferases 249 526 IPR029044 -
Csa04g02506 706 Pfam Glycosyl transferase family group 2 341 537 IPR001173 -
Csa04g02506 706 PANTHER - 6 705 - -
Csa04g02506 706 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 6 705 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01868 Csa04g02506 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02506 Csa-Chr4:24889393 Csa06g01268 Csa-Chr6:10644806 3.44E-143 dispersed
Csa03g04414 Csa-Chr3:38476463 Csa04g02506 Csa-Chr4:24889393 0 transposed
Csa05g02920 Csa-Chr5:29658170 Csa04g02506 Csa-Chr4:24889393 0 transposed
Csa07g01566 Csa-Chr7:16099790 Csa04g02506 Csa-Chr4:24889393 0 transposed
Csa02g01868 Csa-Chr2:17772506 Csa04g02506 Csa-Chr4:24889393 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02506 - - csv:101204215 1378.23