Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02507 ATGACGATGCTAGTTTCCGCCGACCGCAAGTATCGGCGGAGCCCTAAAAAGCTCTTACTCCCTGAGAAATACGACCACCAGGAGCCGGTTGAGGCAGGGTTAGATGGCGCATCGTTCTCCGGAGCCGTCTTTAACCTATCGAGCACCATTGTCGGCGCCGGAATCATGGCTCTTCCAGCTGTCGTGAAACAATTAGGTCTAATTCCAGGGTTGATCTTGATCATGCTCGGATCGACGTTGACAGAGTTGTCAATTGACTTCATCCTGAAATTCTCTCGGGCGTCCAAATCCGTTACGTACGCCGGTGCCGTCGGGGAATCTTTTGGCAACGCCGGACGTACCCTCCTGCAGGTTTGCATCGTGGTCAATAATTTGGGTATGCTCGTCGTCTACATGATCATCATTGGTGATGTGTTGTCAGGAACATCGGCTAATAACATCCATCATAAGGGTGTAATGGAAGAATGGTTTGGTCAACATTGGTGGACCAGCCGTTTATCCTTGATGCTGCTTACGACACTTTTCATTTTTGCGCCTCTAATATCCTTCAAGCGCGTAGATTCCTTGAGATACACATCAGCTTTGTCAGTTGCCTTGGCCATTGTCTTCGTGGCAATCACTGCTGGAGTAGCAATTGCGAAACTGATGGATGGAAGTATTGTAATGCCACGTCTGATGCCCAAAGTTGTTGATCAGGCATCATTTTGGCAACTTTTTACTACTGTTCCAGTTCTAGTCACTGCCTATATCTGTCACCATAATGTTCACCCTATTGAGAATGAGCTAAAAGATCCTACACAGATGAAGTCAATAGTTCGAACATCTCTAACGATATGCTCGACAGTGTATATTGCGACAAGCTTTTTTGGATTTCTCCTGTTTGGAGACCAAACTTTGGATGATGTTCTTGCTAATTTTGATGGAGATCTTGGACTTCCATTCAGCTCATTGCTAGATGATGTTGTAAGAGTGAGCTATGGCATCCACCTGATGCTTGTATTTCCCATTGTTTTTTTCTCCCTTCGCCTCAATGTTGATGGTCTACTCTTTCCCTATGCCATACCTATTACTTTTGACAACCGGCGGTTCTTCTTAATAACTATAGCTCTCATGAGTTTCATCTTTATTGGAGCTAACTTTGTTCCCAGCATCTGGGATGCCTTTCAGCTCACTGGAGCCACAGCTGCCATCTCTGTTGGATTCATTTTCCCCGCTGCTCTCATCCTCAGGGATACTTGTGGAATTGCATCAAAGAAAGACAGACTGATAGCATGGATAATGTTCCTATTAGCTGTTTTCTCAAGTATCGTCGCAATATCATGTGATATCTACAGTTCTTACGTGATGGAGAAACACACTTGA 1362 45.08 MTMLVSADRKYRRSPKKLLLPEKYDHQEPVEAGLDGASFSGAVFNLSSTIVGAGIMALPAVVKQLGLIPGLILIMLGSTLTELSIDFILKFSRASKSVTYAGAVGESFGNAGRTLLQVCIVVNNLGMLVVYMIIIGDVLSGTSANNIHHKGVMEEWFGQHWWTSRLSLMLLTTLFIFAPLISFKRVDSLRYTSALSVALAIVFVAITAGVAIAKLMDGSIVMPRLMPKVVDQASFWQLFTTVPVLVTAYICHHNVHPIENELKDPTQMKSIVRTSLTICSTVYIATSFFGFLLFGDQTLDDVLANFDGDLGLPFSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNVDGLLFPYAIPITFDNRRFFLITIALMSFIFIGANFVPSIWDAFQLTGATAAISVGFIFPAALILRDTCGIASKKDRLIAWIMFLLAVFSSIVAISCDIYSSYVMEKHT* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24900430 24903958 - CsaV3_4G035330.1 Csa04g02507 528117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02507 453 PANTHER AMINO ACID TRANSPORTER AVT6A 11 445 - -
Csa04g02507 453 Pfam Transmembrane amino acid transporter protein 37 437 IPR013057 -
Csa04g02507 453 PANTHER AMINO ACID TRANSPORTER 11 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02507 K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2 - csv:101204458 860.522
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00759 Csa-Chr2:6301905 Csa04g02507 Csa-Chr4:24900430 0 dispersed
Csa04g02507 Csa-Chr4:24900430 Csa05g00873 Csa-Chr5:6668732 9.35E-138 dispersed
Csa04g02507 Csa-Chr4:24900430 Csa07g00190 Csa-Chr7:1547250 1.83E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g03715 . 34 426 Amino Acid/Auxin Permease AAAP Family AT2G41190 64.2 6.6e-139 491.1
Csa03g03713 . 81 442 Amino Acid/Auxin Permease AAAP Family AT2G41190 57.6 9.2e-117 417.5
Csa02g00759 . 3 463 Amino Acid/Auxin Permease AAAP Family AT3G30390 67.5 4.1e-172 601.3
Csa04g02507 . 19 447 Amino Acid/Auxin Permease AAAP Family AT3G30390 60.4 1.3e-146 516.5
Csa03g03839 . 28 437 Amino Acid/Auxin Permease AAAP Family AT3G28960 57.9 1.3e-129 459.9
Csa02g00759 . 21 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 66.7 1.0e-162 570.1
Csa04g02507 . 35 453 Amino Acid/Auxin Permease AAAP Family AT5G38820 59.9 2.3e-143 505.8
Csa07g02124 . 1 399 Amino Acid/Auxin Permease AAAP Family AT1G80510 76.7 1.6e-166 582.8
Csa06g02275 . 30 555 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.3 2.9e-132 469.2
Csa05g02789 . 59 565 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.7 2.1e-130 463.0
Csa06g02275 . 1 487 Amino Acid/Auxin Permease AAAP Family AT2G39130 67.6 3.4e-180 628.2
Csa05g02789 . 51 500 Amino Acid/Auxin Permease AAAP Family AT2G39130 69.8 1.1e-175 613.2
Csa03g03839 . 100 437 Amino Acid/Auxin Permease AAAP Family AT5G15240 59.9 7.8e-112 400.6
Csa05g00873 . 10 432 Amino Acid/Auxin Permease AAAP Family AT3G56200 59.5 1.4e-134 476.5
Csa05g00871 . 10 431 Amino Acid/Auxin Permease AAAP Family AT3G56200 59.5 6.7e-132 467.6
Csa06g02275 . 1 501 Amino Acid/Auxin Permease AAAP Family AT3G54830 62.2 3.6e-167 585.1
Csa05g02789 . 50 511 Amino Acid/Auxin Permease AAAP Family AT3G54830 64.4 3.2e-163 572.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02507 Csa_Chr04 FPKM 14.421456 12.235185 1.376017 0.0 1.774682 4.374681 2.072013 3.833507 2.53163 4.553399