Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02512 ATGAAACTTCCGCTCTATTTCTCTCCCTTTATATTCCCCCCCTCTCAAGTTTACTCTCTTTATTCATTTTTCCCCATTTTGTGTTTTTTTTCACTTTGTCAAACCATGGATACAGATTGCAATACGGGGCTTCTTCTTGGCCTAGGCAGGGTTTCCGGACACAATATTAATGCTTCTGTGCGCTCCGAACTACCCGCTCTTAATAAGAAGAAGCTGCAGCAGGTTTTGAAGTTCGATGATGATATTCTGCCTTCTTTGACTCTTGGGTTGTCGTTTGTTGTCGACACCGCGACGGAGGACGGCTGTTCGGGTAGTCCGGTTTCGTCGTTTTCCAACTCGTCGGGGTTTAAGAGGGAACGTGCTGGGGAAGAGGTGGCGGAGACGGAGGAGTGTATGAAAGTGGGTGAGGAAGATGAAGAGGGAAGTCCGAGGAAGAAACTTAGATTAACAAAACACCAATCCGCCATTTTGGAGGACAATTTCAAAGAACACTCGAGTCTTAGTCCTAAGCAAAAGCAGGATTTGGCTAGGCAATTAAACCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGAACCAAGCTGAAGCAAACAGAAATGGATTGTGAATTACTGAAGAAATGCTGTGAAAAGCTAAAAGAAGAAAACACAAGGCTTCAAAAGGAACTTCAAGAACTTAAATCACTCAAACTAACGCCTCCACCGTTCTGCATGCAACTACAAGCCGCCACTCTCACCGTTTGCCCTTCATGTGAGAGCTCCATCTGCGGCGGCAGCAGCAGCGGCGGTGATGCATCTCCGGCCAATAACTTCTCAATTGGGTCGAAGCCTCAATTTCTCAAATTCCCATTTAACCATCCATCGGCGGCTTGTAATTAG 891 45.79 MKLPLYFSPFIFPPSQVYSLYSFFPILCFFSLCQTMDTDCNTGLLLGLGRVSGHNINASVRSELPALNKKKLQQVLKFDDDILPSLTLGLSFVVDTATEDGCSGSPVSSFSNSSGFKRERAGEEVAETEECMKVGEEDEEGSPRKKLRLTKHQSAILEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTPPPFCMQLQAATLTVCPSCESSICGGSSSGGDASPANNFSIGSKPQFLKFPFNHPSAACN* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24953048 24955314 + CsaV3_4G035380.1 Csa04g02512 528122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02512 296 Pfam Homeodomain 144 198 IPR001356 GO:0003677
Csa04g02512 296 CDD homeodomain 143 201 IPR001356 GO:0003677
Csa04g02512 296 Gene3D - 135 205 - -
Csa04g02512 296 PANTHER - 99 266 - -
Csa04g02512 296 Pfam Homeobox associated leucine zipper 200 233 IPR003106 GO:0006355|GO:0043565
Csa04g02512 296 MobiDBLite consensus disorder prediction 127 146 - -
Csa04g02512 296 SUPERFAMILY Homeodomain-like 142 208 IPR009057 -
Csa04g02512 296 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 99 266 - -
Csa04g02512 296 Coils Coil 199 236 - -
Csa04g02512 296 SMART halz 200 243 IPR003106 GO:0006355|GO:0043565
Csa04g02512 296 ProSitePatterns 'Homeobox' domain signature. 175 198 IPR017970 GO:0000981|GO:0006355
Csa04g02512 296 SMART HOX_1 142 204 IPR001356 GO:0003677
Csa04g02512 296 ProSiteProfiles 'Homeobox' domain profile. 140 200 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02512 Csa-Chr4:24953048 Csa07g02054 Csa-Chr7:19866731 3.62E-56 dispersed
Csa04g02512 Csa-Chr4:24953048 Csa06g03058 Csa-Chr6:26295272 9.20E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31632 PF00046 Homeodomain 2.40E-17 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02512 K09338 - csv:101212868 471.085