Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02512 | ATGAAACTTCCGCTCTATTTCTCTCCCTTTATATTCCCCCCCTCTCAAGTTTACTCTCTTTATTCATTTTTCCCCATTTTGTGTTTTTTTTCACTTTGTCAAACCATGGATACAGATTGCAATACGGGGCTTCTTCTTGGCCTAGGCAGGGTTTCCGGACACAATATTAATGCTTCTGTGCGCTCCGAACTACCCGCTCTTAATAAGAAGAAGCTGCAGCAGGTTTTGAAGTTCGATGATGATATTCTGCCTTCTTTGACTCTTGGGTTGTCGTTTGTTGTCGACACCGCGACGGAGGACGGCTGTTCGGGTAGTCCGGTTTCGTCGTTTTCCAACTCGTCGGGGTTTAAGAGGGAACGTGCTGGGGAAGAGGTGGCGGAGACGGAGGAGTGTATGAAAGTGGGTGAGGAAGATGAAGAGGGAAGTCCGAGGAAGAAACTTAGATTAACAAAACACCAATCCGCCATTTTGGAGGACAATTTCAAAGAACACTCGAGTCTTAGTCCTAAGCAAAAGCAGGATTTGGCTAGGCAATTAAACCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGAACCAAGCTGAAGCAAACAGAAATGGATTGTGAATTACTGAAGAAATGCTGTGAAAAGCTAAAAGAAGAAAACACAAGGCTTCAAAAGGAACTTCAAGAACTTAAATCACTCAAACTAACGCCTCCACCGTTCTGCATGCAACTACAAGCCGCCACTCTCACCGTTTGCCCTTCATGTGAGAGCTCCATCTGCGGCGGCAGCAGCAGCGGCGGTGATGCATCTCCGGCCAATAACTTCTCAATTGGGTCGAAGCCTCAATTTCTCAAATTCCCATTTAACCATCCATCGGCGGCTTGTAATTAG | 891 | 45.79 | MKLPLYFSPFIFPPSQVYSLYSFFPILCFFSLCQTMDTDCNTGLLLGLGRVSGHNINASVRSELPALNKKKLQQVLKFDDDILPSLTLGLSFVVDTATEDGCSGSPVSSFSNSSGFKRERAGEEVAETEECMKVGEEDEEGSPRKKLRLTKHQSAILEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTPPPFCMQLQAATLTVCPSCESSICGGSSSGGDASPANNFSIGSKPQFLKFPFNHPSAACN* | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24953048 | 24955314 | + | CsaV3_4G035380.1 | Csa04g02512 | 528122 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02512 | 296 | Pfam | Homeodomain | 144 | 198 | IPR001356 | GO:0003677 | |
Csa04g02512 | 296 | CDD | homeodomain | 143 | 201 | IPR001356 | GO:0003677 | |
Csa04g02512 | 296 | Gene3D | - | 135 | 205 | - | - | |
Csa04g02512 | 296 | PANTHER | - | 99 | 266 | - | - | |
Csa04g02512 | 296 | Pfam | Homeobox associated leucine zipper | 200 | 233 | IPR003106 | GO:0006355|GO:0043565 | |
Csa04g02512 | 296 | MobiDBLite | consensus disorder prediction | 127 | 146 | - | - | |
Csa04g02512 | 296 | SUPERFAMILY | Homeodomain-like | 142 | 208 | IPR009057 | - | |
Csa04g02512 | 296 | PANTHER | HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN | 99 | 266 | - | - | |
Csa04g02512 | 296 | Coils | Coil | 199 | 236 | - | - | |
Csa04g02512 | 296 | SMART | halz | 200 | 243 | IPR003106 | GO:0006355|GO:0043565 | |
Csa04g02512 | 296 | ProSitePatterns | 'Homeobox' domain signature. | 175 | 198 | IPR017970 | GO:0000981|GO:0006355 | |
Csa04g02512 | 296 | SMART | HOX_1 | 142 | 204 | IPR001356 | GO:0003677 | |
Csa04g02512 | 296 | ProSiteProfiles | 'Homeobox' domain profile. | 140 | 200 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g02512 | Csa-Chr4:24953048 | Csa07g02054 | Csa-Chr7:19866731 | 3.62E-56 | dispersed | |
Csa04g02512 | Csa-Chr4:24953048 | Csa06g03058 | Csa-Chr6:26295272 | 9.20E-76 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31632 | PF00046 | Homeodomain | 2.40E-17 | CL0123 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02512 | K09338 | - | csv:101212868 | 471.085 |