Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02513 | ATGGAGGAATATAATAATGATGTAAATGAAAACTCAAATGGGAGAGGGAATTTCTTGTATGGATCAGGGAATTCTTCATCAAGTAATTTCGGGAGATCAACGGCTGAGATGAATGTTAATAATTTTCATCTTCAACAAGGAACCGACTGTTTTCAATCACCTCATCATCAATCGATTGTCAAGACTGAAGCTACTACTTCACAACATCACCACCTTCTCAAATTTCATTACCCTTTAATCCGACAACAACCACCACCACCACCACCACCTCAGCCGCAAACGTCATGTCGTCCCGAACAAAACGGTGTCGTTGATTTTGAAGCCATTAAGGCTAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGCCAAGAATTTGAAGCACGACAGCGATCTTCCATGGTTTCTGGAGAGACCATTAAGGATCCAGAACTTGATCAATTTATGGAAGCTTATTATGATATGTTGGTGAAATATCGGGAAGAACTTTCAAGGCCGATTCAAGAAGCTATGGATTTTATGCGAAGGATTGAATCTCAGCTCACTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCTGATGACAAGTGTGATGGTATGGGATCATCTGAGGAGGAGCAAGAAAATAGCGGTGGAGAAACCGAACTACCGGAGATCGATCCACGGGCTGAAGATAGAGAATTGAAGAACCACCTACTGAGGAAGTACAGTGGTTACTTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAAAAGGGAAAACTCCCAAAAGAAGCAAGGCAAAAACTCCTTAATTGGTGGGAGTTGCATTACAAATGGCCATACCCTTCAGAGACGGAGAAGGTGGCATTGGCTGAATCCACTGGGTTGGATCAAAAGCAAATAAACAATTGGTTCATTAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAATTCATGGTGATGGATGGCCTTCATCCTCCCAATGCCGCACTCTACATTGACGGTCACTACATGACCGATGGCCATTATCGGCTTGGACCGTGA | 1110 | 44.32 | MEEYNNDVNENSNGRGNFLYGSGNSSSSNFGRSTAEMNVNNFHLQQGTDCFQSPHHQSIVKTEATTSQHHHLLKFHYPLIRQQPPPPPPPQPQTSCRPEQNGVVDFEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGETIKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIESQLTSLCNGPVRIFNSDDKCDGMGSSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP* | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24958037 | 24962528 | - | CsaV3_4G035390.1 | Csa04g02513 | 528123 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02513 | 369 | SMART | KNOX2_2 | 158 | 209 | IPR005541 | GO:0003677|GO:0005634 | |
Csa04g02513 | 369 | Gene3D | - | 276 | 338 | - | - | |
Csa04g02513 | 369 | ProSiteProfiles | 'Homeobox' domain profile. | 271 | 334 | IPR001356 | GO:0003677 | |
Csa04g02513 | 369 | MobiDBLite | consensus disorder prediction | 79 | 99 | - | - | |
Csa04g02513 | 369 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Csa04g02513 | 369 | Pfam | KNOX1 domain | 108 | 150 | IPR005540 | GO:0003677|GO:0005634 | |
Csa04g02513 | 369 | SMART | ELK_2 | 167 | 187 | IPR005539 | GO:0003677 | |
Csa04g02513 | 369 | SMART | ELK_2 | 251 | 272 | IPR005539 | GO:0003677 | |
Csa04g02513 | 369 | CDD | homeodomain | 283 | 335 | IPR001356 | GO:0003677 | |
Csa04g02513 | 369 | ProSiteProfiles | ELK domain profile. | 251 | 271 | IPR005539 | GO:0003677 | |
Csa04g02513 | 369 | MobiDBLite | consensus disorder prediction | 218 | 246 | - | - | |
Csa04g02513 | 369 | SUPERFAMILY | Homeodomain-like | 272 | 347 | IPR009057 | - | |
Csa04g02513 | 369 | MobiDBLite | consensus disorder prediction | 80 | 95 | - | - | |
Csa04g02513 | 369 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 | 1 | 361 | - | - | |
Csa04g02513 | 369 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 361 | - | - | |
Csa04g02513 | 369 | SMART | KNOX1_2 | 107 | 151 | IPR005540 | GO:0003677|GO:0005634 | |
Csa04g02513 | 369 | ProSitePatterns | 'Homeobox' domain signature. | 309 | 332 | IPR017970 | GO:0000981|GO:0006355 | |
Csa04g02513 | 369 | SMART | HOX_1 | 273 | 338 | IPR001356 | GO:0003677 | |
Csa04g02513 | 369 | Pfam | ELK domain | 251 | 272 | IPR005539 | GO:0003677 | |
Csa04g02513 | 369 | Pfam | Homeobox KN domain | 291 | 330 | IPR008422 | GO:0003677|GO:0006355 | |
Csa04g02513 | 369 | Pfam | KNOX2 domain | 163 | 208 | IPR005541 | GO:0003677|GO:0005634 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa02g01861 | Csa04g02513 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01760 | Csa-Chr2:17169389 | Csa04g02513 | Csa-Chr4:24958037 | 1.58E-73 | dispersed | |
Csa04g02513 | Csa-Chr4:24958037 | Csa06g03487 | Csa-Chr6:28557436 | 2.00E-88 | dispersed | |
Csa02g01861 | Csa-Chr2:17710802 | Csa04g02513 | Csa-Chr4:24958037 | 3.63E-117 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31633 | PF03791 | KNOX2 | 4.00E-25 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02513 | - | - | csv:101213104 | 697.967 |