Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02513 ATGGAGGAATATAATAATGATGTAAATGAAAACTCAAATGGGAGAGGGAATTTCTTGTATGGATCAGGGAATTCTTCATCAAGTAATTTCGGGAGATCAACGGCTGAGATGAATGTTAATAATTTTCATCTTCAACAAGGAACCGACTGTTTTCAATCACCTCATCATCAATCGATTGTCAAGACTGAAGCTACTACTTCACAACATCACCACCTTCTCAAATTTCATTACCCTTTAATCCGACAACAACCACCACCACCACCACCACCTCAGCCGCAAACGTCATGTCGTCCCGAACAAAACGGTGTCGTTGATTTTGAAGCCATTAAGGCTAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGCCAAGAATTTGAAGCACGACAGCGATCTTCCATGGTTTCTGGAGAGACCATTAAGGATCCAGAACTTGATCAATTTATGGAAGCTTATTATGATATGTTGGTGAAATATCGGGAAGAACTTTCAAGGCCGATTCAAGAAGCTATGGATTTTATGCGAAGGATTGAATCTCAGCTCACTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCTGATGACAAGTGTGATGGTATGGGATCATCTGAGGAGGAGCAAGAAAATAGCGGTGGAGAAACCGAACTACCGGAGATCGATCCACGGGCTGAAGATAGAGAATTGAAGAACCACCTACTGAGGAAGTACAGTGGTTACTTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAAAAGGGAAAACTCCCAAAAGAAGCAAGGCAAAAACTCCTTAATTGGTGGGAGTTGCATTACAAATGGCCATACCCTTCAGAGACGGAGAAGGTGGCATTGGCTGAATCCACTGGGTTGGATCAAAAGCAAATAAACAATTGGTTCATTAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAATTCATGGTGATGGATGGCCTTCATCCTCCCAATGCCGCACTCTACATTGACGGTCACTACATGACCGATGGCCATTATCGGCTTGGACCGTGA 1110 44.32 MEEYNNDVNENSNGRGNFLYGSGNSSSSNFGRSTAEMNVNNFHLQQGTDCFQSPHHQSIVKTEATTSQHHHLLKFHYPLIRQQPPPPPPPQPQTSCRPEQNGVVDFEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGETIKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIESQLTSLCNGPVRIFNSDDKCDGMGSSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24958037 24962528 - CsaV3_4G035390.1 Csa04g02513 528123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02513 369 SMART KNOX2_2 158 209 IPR005541 GO:0003677|GO:0005634
Csa04g02513 369 Gene3D - 276 338 - -
Csa04g02513 369 ProSiteProfiles 'Homeobox' domain profile. 271 334 IPR001356 GO:0003677
Csa04g02513 369 MobiDBLite consensus disorder prediction 79 99 - -
Csa04g02513 369 MobiDBLite consensus disorder prediction 1 20 - -
Csa04g02513 369 Pfam KNOX1 domain 108 150 IPR005540 GO:0003677|GO:0005634
Csa04g02513 369 SMART ELK_2 167 187 IPR005539 GO:0003677
Csa04g02513 369 SMART ELK_2 251 272 IPR005539 GO:0003677
Csa04g02513 369 CDD homeodomain 283 335 IPR001356 GO:0003677
Csa04g02513 369 ProSiteProfiles ELK domain profile. 251 271 IPR005539 GO:0003677
Csa04g02513 369 MobiDBLite consensus disorder prediction 218 246 - -
Csa04g02513 369 SUPERFAMILY Homeodomain-like 272 347 IPR009057 -
Csa04g02513 369 MobiDBLite consensus disorder prediction 80 95 - -
Csa04g02513 369 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 361 - -
Csa04g02513 369 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 361 - -
Csa04g02513 369 SMART KNOX1_2 107 151 IPR005540 GO:0003677|GO:0005634
Csa04g02513 369 ProSitePatterns 'Homeobox' domain signature. 309 332 IPR017970 GO:0000981|GO:0006355
Csa04g02513 369 SMART HOX_1 273 338 IPR001356 GO:0003677
Csa04g02513 369 Pfam ELK domain 251 272 IPR005539 GO:0003677
Csa04g02513 369 Pfam Homeobox KN domain 291 330 IPR008422 GO:0003677|GO:0006355
Csa04g02513 369 Pfam KNOX2 domain 163 208 IPR005541 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01861 Csa04g02513 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01760 Csa-Chr2:17169389 Csa04g02513 Csa-Chr4:24958037 1.58E-73 dispersed
Csa04g02513 Csa-Chr4:24958037 Csa06g03487 Csa-Chr6:28557436 2.00E-88 dispersed
Csa02g01861 Csa-Chr2:17710802 Csa04g02513 Csa-Chr4:24958037 3.63E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31633 PF03791 KNOX2 4.00E-25 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02513 - - csv:101213104 697.967