Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02516 ATGATGATCGGAGAACAATCTAGATTCAACCACACCATTCAAGTTCCTCCTTGGGACCCACTTGATGACCATCATATGACCGGAATTTCCTCCCCGGTTTTCATTTCCAGTGGGGTCGATTCATTCATCGACTCTTTTTCCTCCATTCACCGTTACCTACCCTCTGCGGCGGATTCTGATGAACTGGATGGGGTGGGAGAGGCGGTCGACGGTTTTTCCTGTGACCATTTTCGGATGTTTGAGTTCAAAATCCGGAGATGTGCACGTGGGAGGTCGCACGATTGGACAGAGTGTCCGTACGCGCATCCTGGCGAGAAAGCTCGCCGCCGTGATCCGAGGAAGTATCATTACTCTGGTACGGCTTGCCCGGAGTTTCGAAAAGGTAATTGTAAGAAAGGGGATTCTTGTGATTTCGCTCATGGGATATTCGAGTGTTGGCTTCATCCAGCTCGGTACCGGACTCAGCCGTGTAAGGATGGGTTAGCTTGTCGCCGTCGTGTTTGTTTTTTTGCACACACGCCGGAACAGCTTCGTGTTCTGCCGCAGCAGAGTCCGAGAACCCCTGTTTCGGCTGATTCCGTTGACGGGTCATCACGAATTGCACATGCATTCGATTCATATTTTATGAATGGATTGGTCTCGTGTATGCGCAATCTTCAACTTGGGAAATTAAAAGCAACCCCTCATTGGGGAAGGATTCAACTGGGACAAAACCCTCTGTCTCCCTCCAGCTCTGGTTTGTACAACTTACCGTCAACTCCAACCACCGGAAATTACGAATTGTGGGGGAAGAATTACGAGGAAGAACCTGCAATGGAGAGAGTGGAATCTGGGAGGGACTTAAGAGCTCAAATGTATGCGAAACTGAGCAAAGACAACTCTGTGAAGGAGATGGATCCGATATTGACACCCGATGTGGGATGGGTTTCGGAGCTACTAATGTGA 945 49.42 MMIGEQSRFNHTIQVPPWDPLDDHHMTGISSPVFISSGVDSFIDSFSSIHRYLPSAADSDELDGVGEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDFAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVLPQQSPRTPVSADSVDGSSRIAHAFDSYFMNGLVSCMRNLQLGKLKATPHWGRIQLGQNPLSPSSSGLYNLPSTPTTGNYELWGKNYEEEPAMERVESGRDLRAQMYAKLSKDNSVKEMDPILTPDVGWVSELLM* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24989859 24990910 + CsaV3_4G035420.1 Csa04g02516 528126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02516 314 PANTHER UNKEMPT FAMILY MEMBER 8 313 IPR045234 -
Csa04g02516 314 Gene3D - 113 185 - -
Csa04g02516 314 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Csa04g02516 314 SMART c3hfinal6 151 174 IPR000571 GO:0046872
Csa04g02516 314 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872
Csa04g02516 314 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 121 141 IPR000571 GO:0046872
Csa04g02516 314 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00066 Csa-Chr2:479979 Csa04g02516 Csa-Chr4:24989859 2.80E-100 dispersed
Csa04g02516 Csa-Chr4:24989859 Csa07g00484 Csa-Chr7:3508522 1.48E-58 dispersed
Csa04g00425 Csa-Chr4:2646906 Csa04g02516 Csa-Chr4:24989859 3.77E-53 transposed
Csa01g02890 Csa-Chr1:25366330 Csa04g02516 Csa-Chr4:24989859 2.77E-107 wgd
Csa02g01860 Csa-Chr2:17700459 Csa04g02516 Csa-Chr4:24989859 4.10E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31634 PF00642 zf-CCCH 5.30E-05 CL0537 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02516 - - csv:101205433 651.358