Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02524 ATGGGAATCTGTATATCCTCTGCATCTTCTCAGATTCGCCATGAAACTAACAAAGTTGGAAGTATTATTATTGAAGAAGATCATTATAAGTCATGTTATTCTGTTTGCGGGATTCAGAAACTCGAATCCATTTGTTCTAAGCAAGGCAGCAAAGGAATCAATCAAGATGCTGCTTTTGCATATCAGGAGTATGGAGAAGTTGAAGAGAGTGATTTGTTTGGAGTTTTTGATGGGCATGGACCAAATGGTCATATTGTGAGCAATTTAGTGAAGAATAGATTGCCTTCATTATTGCTTGGGGAGGTAACTGCTAAGTCAAGCTTGGTGAAGAGGAAGAGTTTCAATGCATGGAAAGAAGCTTTTGAAACTTCCTTCAAGGTTATGGATAAAGAGATCAAACTCCAAGAGAATTTGGATGGCTCTTGCAGTGGATCAACCGCTGTTGTTATGGTCAAACAGGAAGATTATTTGGTGATTGGGAATTTGGGAGATTCAAGGGCGGTGATGGGGAGGATGAGGGAGGATGGAGGAATCAAAGCCGTTCAGTTAACTACAGATTTAAAGCCTGGATTGGAGAGTGAGGGTGAGCGAATAAGAAGATGTAAAGGGAGAGTCTTGGCGCTGAAAGACGAAGCTCATATACAAAGAGTGTGGCTCCCCAACGAAGACTCACCGGGGCTGGCTATGTCAAGAGCTTTTGGTGATTTTGCTCTTAAAGATTATGGCATTATTAATCTCCCTGATGTCTCCTTCCGCCCTCTCACTTCTCTCGATCGCTTCATCGTTCTCGCCACTGATGGGATATGGGATGTGCTGAGCAACGACGAAGTAGCGTCCATCGTTTGGGCGGCGGAGAGTGAAGAAGCGGCGGCGAAAGCGGTGGTGGATGCGGCGACAGAGGCTTGGAAACGCTGGCCTTCTTCAAAACAAGACGACTGCACCGTCGTTTGCCACTTCTTACAAACCCCAAAACAATGA 978 44.79 MGICISSASSQIRHETNKVGSIIIEEDHYKSCYSVCGIQKLESICSKQGSKGINQDAAFAYQEYGEVEESDLFGVFDGHGPNGHIVSNLVKNRLPSLLLGEVTAKSSLVKRKSFNAWKEAFETSFKVMDKEIKLQENLDGSCSGSTAVVMVKQEDYLVIGNLGDSRAVMGRMREDGGIKAVQLTTDLKPGLESEGERIRRCKGRVLALKDEAHIQRVWLPNEDSPGLAMSRAFGDFALKDYGIINLPDVSFRPLTSLDRFIVLATDGIWDVLSNDEVASIVWAAESEEAAAKAVVDAATEAWKRWPSSKQDDCTVVCHFLQTPKQ* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25021845 25023594 - CsaV3_4G035500.1 Csa04g02524 528134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02524 325 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
Csa04g02524 325 ProSiteProfiles PPM-type phosphatase domain profile. 41 320 IPR001932 -
Csa04g02524 325 Gene3D - 39 325 IPR036457 -
Csa04g02524 325 Pfam Protein phosphatase 2C 48 299 IPR001932 -
Csa04g02524 325 PANTHER ALPHABET, ISOFORM E-RELATED 1 323 - -
Csa04g02524 325 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 323 - -
Csa04g02524 325 CDD PP2Cc 43 317 IPR001932 -
Csa04g02524 325 SMART PP2C_4 25 318 IPR001932 -
Csa04g02524 325 SUPERFAMILY PP2C-like 42 321 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02524 Csa-Chr4:25021845 Csa06g00378 Csa-Chr6:3142443 2.96E-99 dispersed
Csa04g02524 Csa-Chr4:25021845 Csa02g00474 Csa-Chr2:3366498 2.84E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02524 - - csv:101214070 619.772