Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02535 ATGTCGAAAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGAGGACTTAACGAGCATCAGCGATTGAGCGATGCTCGACCTGTAACACGACCAAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCGGGTTCGTCGTCATCTGGGTCTTCTTCGTCTTTGTCTATGGCGTCTTCTACTACAATGGGGAGATTGGAAGCTGTTGAATCAGTCGTTGATCCGGCGGCTTCTGGGGATGTGGGCGGTGGGTGCGTGGATTTCAATGCCTTGGAAGAGGAGTTTCAGGTGCAATTGGCTATGGCGATTAGTGCTTCCGATCCTGATTCTAGACAAGATACTGAATCAGCTCAGATCGATGCTGCCAAGCGGATGAGTCTTGGCTGTTCGCCTTCAGTCTCCGGCAGTAAAGCCCTCGCTGAATTCCTCTCGCTTCAGTATTGGAGCTATAATGTTGTAAATTATGACGAGAAAGTGATGGATGGATTTTATGACTTATATGGCATTACTGCAAGTTCTAGCACCCGTGGAAAGATGCCACTGTTAGTTGATCTTAAAGAAATATGTGTGACGAGTGATATTGATTATGAGGTGATTTTGGTAAACCGCTTGCTTGATCCTGAGCTTCAACAGCTGGAGAGACAAGCATATAACATATTCATGGAATGCAGAGTTTCTGAATATGGCTTCATTTTAAGTGGCCTGGTTCAAAAAATTGCTGATATGGTTGTTGCTAGAATGGGTGGCCCTGTTGGTGATGCTGAAGAAATGTTGAGAAGGTGGACACGCAGGAGTTATGAGATGCGTAGTTCTCTGAACACTATTATTCTACCACTTGGTCGTCTTGATATTGGACTTGCACGTCATAGAGCCTTGCTTTTTAAGGTGCTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGACGGAGCTGTGAACATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCGGGCACGTTAATTCCCTCAGAGGCGCCCAGCGGTCAATTTTCGAATTATGGATTTGATAGAAGGCCAGCAGATGTTATAGAAGTTCCCGAAGATACTCCAATATTACAAAATGAAGGAGCTGAAGCAGTGTCAATTTCATCTACTCAAGATGAAGTAGCAGATGTTTGCAACTTAATATCCAAAGAAGCTTCAGATTTAGATGCTCAATCAAAAGAAAACATTAGGAACTTTATTGAAGAAATTCAAAGTGGGAGTTCCGGTTATGATTTTGCAAAGCTTCTAGAATCAGAAAGCAGTGCCTGTGAAGGTTCATTGGGTGCATTTGCACAGTCCGCTTCTGCACAAAAGAAGAAAGTGAAAAAAGTGTCAAAGTATGTCATAAGTGCTGCAAAGAACCCAGAGTTTGCTCAGAAATTACATGCTGTCTTGTTAGAGAGTGGTGCGTCACCTCCTGCAGATTTGTTTTCAGATATAGAATCACAGGACAACGGTGAAAGCAAAGAAACTTTTCAAATGTATCCAATCAATGGGAAAGGGATAGATGTTGGGCTCCAGAGCCACTCCTATATTTTAGCAAGCCACGGACAGTCTTCTGCTACTTCTACTGAAGCGGAGTATTTGAACAACGTTGTCCATGAAAATAAACAGAAAGTGCCTTCTGGGGGATTGTCTGAAGAACAAATGGCCAATACAAATGCCAACAACCACAGCATTTTTTGGCCTCACAGTATGAAAAACGAGGGATTTGTGTTTGTTGATGTTAATGGTGAAGCAGGAAAATTGGTTGATGTTAATGGAACTTTTCATCGTGAACATATGGATGATGTTTTGTTGACATCTGATACTGACTCTCATAAGAAACTAGGAAGTGCCTTAGTGAGTGAAGAAAGAAGATTGTTGCAAGATAAGAGCGGTGGAACTCTTCAATGCTTTGATTTGTGTGAAAAGCCACTTGAAAATTTGTTACAAACTGATGATAGTAAACTGCATGCTAGTGATGAGCACAATGAGACAATTAACCCAATATTAGGTGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGTGAACGTATTGGTATTGGCTCATATGGCGAGGTTTATCGAGCAGATTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGATCAAGATTTTTCTGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGGTTGAGGCACCCTAATGTTGTCCTTTTCATGGGAGCTGTGACTCGCCCTCCTCATTTCTCTATCCTTACAGAGTTTCTTCCCAGGGGAAGTTTGTATAGGTTACTGCATCGGCCCAACTCTCAGCTAGATGAAAGGAGACGATTGAAAATGGCTCTTGATGTGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACTATTGTTCATAGAGACCTAAAGTCCCCCAATCTCCTTGTTGACAAAAACTGGGTTGTCAAGGTTTGCGATTTTGGTTTGTCACGTGTGAAGCAGAATACATTTCTGTCTTCAAAATCAACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTTCTAAGGAATGAACCAGCCAATGAAAAGTGTGATGTGTATAGTTTTGGTGTAATATTGTGGGAGTTGACGACATGCCGCATACCGTGGAAAGGTTTGAACCCAATGCAGGTCGTAGGAGCTGTTGGATTCCAGAATAGGCGCCTGGAAATCCCACAAGATGTTGATCCAGCAGTTGCACAGATCATTTGCGATTGTTGGCAAACGGACTCACAATTGAGGCCGTCGTTTTCTCAGCTTATTACTCGATTGCGGCGCCTGCAACGGCTTGTTCAGAAAACAGACTCCGGGAATCAAATATCGGAGTGA 2910 42.85 MSKMKHLLRKLHIGGGLNEHQRLSDARPVTRPSSSPSPGPSPNSNPSGSSSSGSSSSLSMASSTTMGRLEAVESVVDPAASGDVGGGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSVSGSKALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITASSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDPELQQLERQAYNIFMECRVSEYGFILSGLVQKIADMVVARMGGPVGDAEEMLRRWTRRSYEMRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSGQFSNYGFDRRPADVIEVPEDTPILQNEGAEAVSISSTQDEVADVCNLISKEASDLDAQSKENIRNFIEEIQSGSSGYDFAKLLESESSACEGSLGAFAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIESQDNGESKETFQMYPINGKGIDVGLQSHSYILASHGQSSATSTEAEYLNNVVHENKQKVPSGGLSEEQMANTNANNHSIFWPHSMKNEGFVFVDVNGEAGKLVDVNGTFHREHMDDVLLTSDTDSHKKLGSALVSEERRLLQDKSGGTLQCFDLCEKPLENLLQTDDSKLHASDEHNETINPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPQDVDPAVAQIICDCWQTDSQLRPSFSQLITRLRRLQRLVQKTDSGNQISE* 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25059511 25068121 - CsaV3_4G035610.1 Csa04g02535 528145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02535 969 Gene3D Phosphorylase Kinase; domain 1 692 776 - -
Csa04g02535 969 ProSitePatterns Protein kinases ATP-binding region signature. 705 727 IPR017441 GO:0005524
Csa04g02535 969 SMART serkin_6 699 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02535 969 MobiDBLite consensus disorder prediction 44 64 - -
Csa04g02535 969 PRINTS Tyrosine kinase catalytic domain signature 773 786 IPR001245 GO:0004672|GO:0006468
Csa04g02535 969 PRINTS Tyrosine kinase catalytic domain signature 812 830 IPR001245 GO:0004672|GO:0006468
Csa04g02535 969 PRINTS Tyrosine kinase catalytic domain signature 859 869 IPR001245 GO:0004672|GO:0006468
Csa04g02535 969 PRINTS Tyrosine kinase catalytic domain signature 878 900 IPR001245 GO:0004672|GO:0006468
Csa04g02535 969 PRINTS Tyrosine kinase catalytic domain signature 922 944 IPR001245 GO:0004672|GO:0006468
Csa04g02535 969 Pfam Ethylene-responsive protein kinase Le-CTR1 143 347 - -
Csa04g02535 969 SUPERFAMILY Protein kinase-like (PK-like) 679 949 IPR011009 -
Csa04g02535 969 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 83 963 - -
Csa04g02535 969 ProSiteProfiles Protein kinase domain profile. 699 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02535 969 CDD STKc_MAP3K-like 705 951 - -
Csa04g02535 969 Gene3D Transferase(Phosphotransferase) domain 1 778 965 - -
Csa04g02535 969 PANTHER SERINE-THREONINE PROTEIN KINASE 83 963 - -
Csa04g02535 969 MobiDBLite consensus disorder prediction 1 64 - -
Csa04g02535 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Csa04g02535 969 Pfam Protein tyrosine and serine/threonine kinase 699 951 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00707 Csa-Chr1:4485111 Csa04g02535 Csa-Chr4:25059511 5.67E-77 dispersed
Csa01g02850 Csa-Chr1:25004539 Csa04g02535 Csa-Chr4:25059511 1.01E-70 dispersed
Csa03g04499 Csa-Chr3:39171068 Csa04g02535 Csa-Chr4:25059511 5.62E-27 dispersed
Csa04g02535 Csa-Chr4:25059511 Csa06g01870 Csa-Chr6:16863776 1.84E-111 dispersed
Csa04g02571 Csa-Chr4:25277399 Csa04g02535 Csa-Chr4:25059511 6.26E-26 dispersed
Csa04g02535 Csa-Chr4:25059511 Csa06g02656 Csa-Chr6:23385603 1.03E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78194 PF07714 PK_Tyr_Ser-Thr 4.10E-65 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02535 K04424 - csv:101214554 1842.01